Re: [PyMOL] suface display protein-protein interactions...residues getting bleached.

[Jason V. <jas...@sc...>]

Hi Yarrow,

Can you please provide a simple script for us to work from?  Then we
can help modify it to suit your needs.

Cheers,

-- Jason

On Mon, Apr 18, 2011 at 1:57 PM, Yarrow Madrona <ama...@uc...> wrote:
> Hello Pymol users
>
> I went to a recent Crystallography workshop and noticed everyone had great
> pictures of their protein-protein binding interface.  One molecule had a
> surface representation while another did not.  The interacting residues
> were very clear.  I have tried to repeat this by making a surface
> representation of one molecule and hiding the cartoon. Then I copy the
> molecule and show only the residues.  This allows me to use different
> colors for surface and residues but when I use transparency for the
> surface my residues in the second molecule start to get bleached out.  Can
> anyone help me with this.  Thanks!
>
> Yarrow
>
> --
> Yarrow Madrona
>
> Graduate Student
> Molecular Biology and Biochemistry Dept.
> University of California, Irvine
> Natural Sciences I, Rm 2403
> Irvine, CA 92697
>
>
>
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jas...@sc...
(o) +1 (603) 374-7120