[PyMOL] small molecule geometry gets whacked in creating multi-state object. rebuild?

[Seth H. <se...@gm...>]

Hi all,

I feel I should know this one. I have a program looping through structures
and bringing each small molecule into a single multi-state object so I can
tab through the states.

I do:
create all_lig, this_ligand, 1, 1
then go on to the next one:
create all_lig, next_ligand, 1, 2
and so on....

however, the bonds get all messed up, presumably with atom names confused? I
tried issuing a "rebuild all_lig" in between adding but that didn't seem to
help. What am I missing?

Thanks,
Seth