Re: [PyMOL] Strange pattern on the cartoon representation

[Tsjerk W. <ts...@gm...>]

Hi Afonso,

I haven't seen this before. It seems to be a different texture. Did
you touch any of the settings (like ray_texture)? Surely you didn't
just use 'ray' after you loaded the structure. It wouldn't have shown
up as cartoon to begin with. If you give the full set of commands you
used, it will probably allow us to pinpoint the cause of a newspaper
being printed on your protein :)

(oh, and use reply-to-all to keep the discussion on the list :))

Cheers,

Tsjerk

On Tue, May 18, 2010 at 1:04 PM, Afonso Duarte <afo...@gm...> wrote:
> Hi Tsjerk,
>
> You are completely right ... I should have included an example.
> This picture was made with
> ray 1200,1200
> then saved as a png
> I also tried only ray and other values but no luck, I thought it could be
> memory problems but restarting also did not fixed it.
>
> Cheers
>
> Afonso
>
> On Tue, May 18, 2010 at 12:53 PM, Tsjerk Wassenaar <ts...@gm...>
> wrote:
>>
>> Hi Afonso,
>>
>> Can you tell which newspaper? And does it show the date? :)
>> Seriously, it's difficult to make out more, unless you give more
>> information, like a link to the image, or the series of commands you
>> used to get to the point you're at. What you describe might be caused
>> by two interfering surfaces,e.g., trying to show two times the same
>> thing as cartoon.
>>
>> Cheers,
>>
>> Tsjerk
>>
>> On Tue, May 18, 2010 at 12:42 PM, Afonso Duarte <afo...@gm...>
>> wrote:
>> > Dear All,
>> >
>> > I am making some figures using ray. When the processing is finished I
>> > get a
>> > strange pattern (like newspaper paper pattern) in my cartoon
>> > representations, Spheres and sticks representations are OK only the
>> > cartoon.
>> > I have tried to change the options on the cartoon representation but
>> > without
>> > any sucess.
>> >
>> > Did any body had such problem before?
>> >
>> > Best
>> >
>> > Afonso
>> >
>> >
>> > ------------------------------------------------------------------------------
>> >
>> >
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>> >
>>
>>
>>
>> --
>> Tsjerk A. Wassenaar, Ph.D.
>>
>> post-doctoral researcher
>> Molecular Dynamics Group
>> Groningen Institute for Biomolecular Research and Biotechnology
>> University of Groningen
>> The Netherlands
>
>



--
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
Groningen Institute for Biomolecular Research and Biotechnology
University of Groningen
The Netherlands



-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
Groningen Institute for Biomolecular Research and Biotechnology
University of Groningen
The Netherlands