From: Nicolas B. <nic...@gm...> - 2010-03-12 19:36:40
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Could the connect_mode setting be better documented? The current documentation doesn't say much about what that setting does. nick On Fri, Mar 12, 2010 at 12:08, Jason Vertrees < jas...@sc...> wrote: > Nicolas, > > Try: > > set connect_mode, 2 > load yourXYZ.xyz, discrete=1 > > -- Jason > > On Fri, Mar 12, 2010 at 1:50 PM, Nicolas Bock <nic...@gm...> > wrote: > > Please find attached an example xyz file. > > > > nick > > > > > > On Fri, Mar 12, 2010 at 11:20, Nicolas Bock <nic...@gm...> > wrote: > >> > >> When I load an xyz file with several frames (for example the result of > an > >> MD simulation) I find that pymol calculates and sets the bonds only > using > >> the initial frame. For frames > 1 the bonds are not recalculated. The > only > >> "work around" I found is to load(..., multiplex=1) which loads the > frames > >> into separate objects. But now I can not play the MD trajectory as a > movie. > >> > >> I would like to suggest that this feature be added to pymol so that MD > >> trajectories can be played with proper bonding for all frames. > >> > >> Thanks > >> > >> nick > >> > > > > > > > ------------------------------------------------------------------------------ > > Download Intel® Parallel Studio Eval > > Try the new software tools for yourself. Speed compiling, find bugs > > proactively, and fine-tune applications for parallel performance. > > See why Intel Parallel Studio got high marks during beta. > > http://p.sf.net/sfu/intel-sw-dev > > _______________________________________________ > > PyMOL-users mailing list (PyM...@li...) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pym...@li... > > > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) Jas...@sc... > (o) +1 (603) 374-7120 > |