Re: [PyMOL] feature request

[Jason V. <jas...@sc...>]

Nicolas,

Try:

set connect_mode, 2
load yourXYZ.xyz, discrete=1

-- Jason

On Fri, Mar 12, 2010 at 1:50 PM, Nicolas Bock <nic...@gm...> wrote:
> Please find attached an example xyz file.
>
> nick
>
>
> On Fri, Mar 12, 2010 at 11:20, Nicolas Bock <nic...@gm...> wrote:
>>
>> When I load an xyz file with several frames (for example the result of an
>> MD simulation) I find that pymol calculates and sets the bonds only using
>> the initial frame. For frames > 1 the bonds are not recalculated. The only
>> "work around" I found is to load(..., multiplex=1) which loads the frames
>> into separate objects. But now I can not play the MD trajectory as a movie.
>>
>> I would like to suggest that this feature be added to pymol so that MD
>> trajectories can be played with proper bonding for all frames.
>>
>> Thanks
>>
>> nick
>>
>
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) Jas...@sc...
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