Re: [PyMOL] Preserving sec. structure in states for animation

[Michael Z. <mic...@ia...>]

Another idea would be to use enable/disable.  Load all the structures
and then only have one enabled at a time

load frame1.pdb, morph_frame1
. . .
load frame20.pdb, morph_frame20

disable *frame*
enable *frame1
   take a picture
disable *frame1
enable *frame2
   take a picture

repeat

A bit tedious, but very scriptable - write a script to make such a
file if you have a lot of frames.

Mike

On Tue, Jan 12, 2010 at 1:13 PM, Schubert, Carsten [PRDUS]
<CSC...@it...> wrote:
> Hi,
>
> I am trying to make a movie form a set of morphed pdb files. Currently the
> individual files are loaded into the same object with increasing states, all
> pdb files contain the SHEET and HELIX record created by dssp.  The object is
> then displayed as a cartoon. When I loop over the states I noticed that
> Pymol only seems to take secondary structure information from the first pdb
> file into account. For instance I have a helix which is split into 2 during
> the morph, but only displayed as one helix during the animation, albeit a
> bit stretched. Loading the individual files produces the right sec.
> structure. Any idea how I can convince Pymol to update the cartoon
> representation with each frame?
>
> Cheers,
>
>         Carsten
>
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