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Re: [PyMOL] coloring based on sequence identity
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From: Robert C. <rob...@qu...> - 2008-08-25 16:16:22
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Dear Morri, On Fri, 22 Aug 2008 13:35:32 -0700, Morri Feldman <mor...@gm...> wrote: > Dear Rob, > > I'm interested in using your variability script with a substitution matrix. > Would you please send me an example of a substitution matrix file? Thanks > for writing such a useful script. Sure. Attached are a couple of matrices. One is a blosum80 matrix and one is a hydrophobicity matrix. I think I found them at: http://www.techfak.uni-bielefeld.de/bcd/Curric/PrwAli/nodeD.html http://www.techfak.uni-bielefeld.de/bcd/Curric/PrwAli/nodeE.html You should be able to easily create your own following those examples. Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <rob...@qu...> http://pldserver1.biochem.queensu.ca/~rlc |