Re: [PyMOL] move density

[DeLano S. <de...@de...>]

Bart,

The way to do this is to apply molecular transformations first and then
matrix_copy (formerly matrix_transfer) from the transformed molecule object
to the map object before issuing the isomesh command.

load mol1.pdb
load mol2.pdb

load map1.ccp4
load map2.ccp4

align mol2////CA, mol1////CA

matrix_copy mol2, map2

isomesh mesh1, map1
isomesh mesh2, map2

etc.

Cheers,
Warren

--
DeLano Scientific LLC
Subscriber Support Services
mailto:su...@de...


-----Original Message-----
From: pym...@li...
[mailto:pym...@li...] On Behalf Of
kue...@bb...
Sent: Monday, July 28, 2008 7:30 AM
To: pym...@li...
Subject: [PyMOL] move density

Dear all,

is it possible by now to apply a rotation matrix to a electron density map
object?

If I am not mistaken, there was a way to output rotation matrix of 'align'
(or 'super' and so on), but rotating an isomesh object might be the crucial
point. Any hints or future annoucements (beta?) are very welcome.

Best regards,
Bart

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