Re: [PyMOL] Transparency in individual molecules/objects?

[Schubert, C. [PRDUS] <CSC...@pr...>]

Mark,

you need to set

set stick_transparency=0.9, M223Dser

> -----Original Message-----
> From: Dr. Mark Mayer [mailto:ma...@ma...]
> Sent: Thursday, March 20, 2008 5:22 PM
> To: Schubert, Carsten [PRDUS]
> Cc: pym...@li...
> Subject: RE: [PyMOL] Transparency in individual molecules/objects?
> 
> 
> Hi Carsten,
> 
> Thanks for response - I Just tried following and its still drawn as 
> solid object. Did I mess up or should this have worked?
> 
> create M223Dser, /mol4//D/MET`223 and !mc
> show sticks, M223Dser
> set transparency=0.9, M223Dser
> 
> 
> >Mark,
> >
> >as far as I know, transparency is supported for sufaces and sticks 
> >or cartoons. Filter the settings menu for transparency to get a 
> >better idea. To set transparency for an object
> >
> >set transparency = 0.5, <object>
> >
> >should work
> >
> >	Carsten
> >
> >>  -----Original Message-----
> >>  From: pym...@li...
> >>  [mailto:pym...@li...]On Behalf
> >>  Of Dr. Mark
> >>  Mayer
> >>  Sent: Thursday, March 20, 2008 4:46 PM
> >>  To: PyM...@li...
> >>  Subject: [PyMOL] Transparency in individual molecules/objects?
> >>
> >>
> >>  Hi All,'
> >>
> >>  If I have a PyMol script with multiple molecules loaded, 
> is there a
> >>  way to set transparency (say for sticks or spheres), on a by
> >>  molecule, or even better on an object by object case. 
> Used to be able
> >>  to do this in molscript/raster3d, but for PyMol I've only 
> figured out
> >>  how to set sphere and stick transparency as global variables
> >>
> >>  Thanks
> >>
> >>  --
> >  > Mark Mayer Ph.D.
> >
> 
> 
> -- 
> 
> 
> 
>