Re: [PyMOL] apbs plugin for macpymol

[Michael L. <mgl...@gm...>]

> I would like to use apbs from within PyMOL.  I have downloaded and
> installed the latest version of apbs, and apbs_tools.py exists in
> $PYMOL_PATH/modules/pmg_tk/startup/.  However, I find no "plugins" entry
> in any of the PyMOL menus.

I think that you need to rename the application bundle to
"PyMOLX11Hybrid" in order to use plugins.

> Am I blind or daft?  But the question I'd
> really like to have answered is how do I get abps to work.

I would suggest

1) register APBS here http://agave.wustl.edu/apbs/download/
2) Install fink ( http://finkproject.org/ ) and then use it to install
apbs (e.g. by typing "fink install apbs" on the command line).

hope that helps,

-michael

>
> I'm using educational MacPyMOL, which "integrates and extends
> Open-Source PyMOL 1.0r1".
>
> Thanks.
>
>
> Andreas
>
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-- 
Biophysics Graduate Student
Carlson Lab, University of Michigan
http://www.umich.edu/~mlerner