Re: [PyMOL] Dots in an image

[Jason T M. <jm...@bi...>]

hide nonbonded

should remove these.  They must be in your pdb file somewhere: waters,
metals something.

Cheers,
JTM

"We can be sure that if a detailed understanding of the molecular basis of
chemo-therapeutic activity were to be obtained, the advance of medicine
would be greatly accelerated."

Linus Pauling, Nobel Laureate 1954

"...everything that living things do can be understood in terms of the
jigglings and wigglings of atoms."

Richard Feynman, Nobel Laureate 1965

****************************************
Jason Thomas Maynes, MD/PhD
Department of Biochemistry and Molecular Biophysics
Resident in Anaesthesia and Paediatrics
Faculty of Medicine
Washington University in St. Louis
jm...@bi...
****************************************

> Hi All,
>
> In the image linked below, there are a bunch of colored "jacks" that I
> can't
> seem to hide.  I know some are ions, and I can remove those, but others
> are
> just oxygens and carbons.  I can eliminate them one-by-one by hand, but
> it's
> a chore because they keep turning up -- unfortunately much clearer when
> the
> image is ray-traced.  Any ideas about what they might be?
>
> http://www.nmr.mgh.harvard.edu/~kdevaney/img.png<http://www.nmr.mgh.harvard.edu/%7Ekdevaney/img.png>
>
>
> Thanks,
>
> Aaron
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