Re: [PyMOL] Displaying Disulphide bonds using Pymol

[Nagesh C. <nag...@an...>]

Hi Jerome,
Thanks for the mail. The web address you gave is about obtaining 
information about Cys involved in bond formation. In my case, I do know 
which pair of Cys are involved in it and this information is also 
provided in the PDB file but I am unable to display the bridge in the 
PyMOL viewer.
Also I need to display the structure in a particular orientation. Can 
this information be be added in my script.
Thanks
Nagesh

Jerome Pansanel wrote:

>Hello,
>
>You can find some documentation about sulfur bonds on this page:
>http://www.pymolwiki.org/index.php/Process_All_Files_In_Directory
>
>If you are not successfull by using this resource, don't hesitate to post
>again.
>
>Cheers,
>
>Jerome Pansanel
>
>Selon Nagesh Chakka <nag...@an...>:
>
>  
>
>>Hello everyone,
>>I am unable to display disulphide bonds using PyMOL (version 0.97). My 
>>understanding is that PyMOL can connect Cys that are within bonding 
>>distance. The PDB file (ID 1AG2) defines residues involved in the SSBond
>>
>>formation. I  also tried to  use the command "bond" to connect the 
>>residues but without any success. I am not sure if I am doing anything 
>>wrong. Any suggestion in this regard is appreciated.
>>Thanks
>>Nagesh
>>
>>
>>Using Tomcat but need to do more? Need to support web services,
>>security?
>>Get stuff done quickly with pre-integrated technology to make your job
>>easier
>>Download IBM WebSphere Application Server v.1.0.1 based on Apache
>>Geronimo
>>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
>>_______________________________________________
>>PyMOL-users mailing list
>>PyM...@li...
>>https://lists.sourceforge.net/lists/listinfo/pymol-users
>>
>>    
>>
>
>
>
>
>--------------------------------------------
>Mail sent through IMP: http://horde.org/imp/
>  
>