I would like to ask for a configuration entry that
sets the pymol working directory. I would also
request that pymol be made to ignore hidden
directories (in linux). As it is now, I fire up pymol
and open a file, the window pops up and lists all the
hidden directories followed by all the normal
directories. It is quite cumbersome to navigate back
to my structures subdirectory wherein my pdb files
reside. In any case, having a default working
directory setting would be very helpful.
You can put a command such as:
cd $HOME/my/working/directory
into a your $HOME/.pymolrc file.