chain id in pymol is not case sensitive. This results in problem in the case when PDB file contains chains with the same chain id, but different case (see for example 3bz1 chain y and chain Y)
unset ignore_case
Not a bug. Just set the following and try again:
set ignore_case, 0
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unset ignore_case
Not a bug. Just set the following and try again:
set ignore_case, 0