steps to reproduce:
PyMOL>fetch 1ake 4ake, async=0
PyMOL>super 1ake and chain A, 4ake and chain A, object=aln
PyMOL>count_atoms aln and name N
count_atoms: 0 atoms
Tested with PyMOL 1.1r1 to 18.104.22.168
The problem is a forward search over atoms in SelectorCreateAlignments. This works fine if a residue is represented by its first atom, but "super" passes the CA atom as representative, which is sorted after the N atom.
fixed in rev 4006
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