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Re: [Psn-general] scm with mpi
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From: Rudy G. <rgu...@se...> - 2021-02-19 13:01:51
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Hi Rikard, Thank you for your reply. Yes, using absolute path solve the issue. Regards, Rudy From: Rikard Nordgren <rik...@fa...> Sent: Thursday, February 18, 2021 10:35 PM To: psn...@li... Subject: Re: [Psn-general] scm with mpi Hi, There is or has been a bug in scm requiring an absolute path to the parafile. I see that you are using a relative path so try an absolute instead and see if it solves the problem. Best regards, Rikard On 2021-02-18 16:19, Rudy Gunawan via Psn-general wrote: Hi, I have a question about the scm using mpi. I could run "execute" with an mpi, but when I tried to do scm with mpi, I have the following error. Without the mpi, the scm ran, but of course, it took a long time. It seems that it cannot find "FDATA". Would you please advice? Thanks, Rudy C:\Users\rgunawan\Project\prod_lv\trunk\analysis\pk_mmae\model>scm -config=config_run100_scm.scm -dir=100_scm -parafile=..\..\..\..\..\mpiwin16.pnm Running dummy model to filter data Starting 1 NONMEM executions. 1 in parallel. S:1 .. All executions started. F:1 .. Calculating continuous covariate statistics |....................................| ... done Calculating categorical covariate statistics |........................................| ... done Starting scm forward search Starting 16 NONMEM executions. 5 in parallel. S:1 .. S:2 .. S:3 .. S:4 .. S:5 .. NMtran could not be initiated (the NMtran output file FDATA is missing). There is no output for model 1. - check that the nmfe script can be run independent of PsN Rudy Gunawan, PhD Associate Director, Clinical Pharmacology & Pharmacometrics www.seagen.com<https://linkprotect.cudasvc.com/url?a=http%3a%2f%2fwww.seagen.com&c=E,1,_cCJeaaaVlASNqT9YcJlVbMktDACNzMyxB7VUDYP3w_kU5H3wnWITCKnqcj7haYt24WyMXEXbZyZWuv4WrSsaoW9E-rEO3k96GVuQj4ggxzqYsNVz1ToN8Bo5A,,&typo=1> [cid:image002.png@01D70677.838AB720] CONFIDENTIALITY NOTICE: The information contained in this email is intended for the named recipient(s) only. It may contain privileged and confidential information. Any review, retransmission, dissemination, or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient(s) is prohibited. If you are not the addressee or the person responsible for delivering this to the addressee, or have received this email in error, please notify us immediately by returning the original message to the sender by email and deleting the material from any computer. _______________________________________________ Psn-general mailing list Psn...@li...<mailto:Psn...@li...> https://lists.sourceforge.net/lists/listinfo/psn-general -- Rikard Nordgren Systems developer Department of Pharmacy Faculty of Pharmacy Uppsala University Box 591 75124 Uppsala Phone: +46 18 4714308 www.farmbio.uu.se/research/researchgroups/pharmacometrics/<https://linkprotect.cudasvc.com/url?a=http%3a%2f%2fwww.farmbio.uu.se%2fresearch%2fresearchgroups%2fpharmacometrics%2f&c=E,1,WIO6n6dk2Kxpe5i3fU9nDJzJ00pjY6iPJTpt6a6L9-gUDO-lYuBQCERcT9xIoVb6JH_DjQflPOG28mGzSt98FZE7fKv54cq9NNEwgzTsZnjGff6qB_3AVYRqVnqj&typo=1> När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/<https://linkprotect.cudasvc.com/url?a=http%3a%2f%2fwww.uu.se%2fom-uu%2fdataskydd-personuppgifter%2f&c=E,1,yS1uEVgyBitVI9stoFfXVXNWmax6Zv-b-a4RTDVZrSq9iH5SqseiTJkRBhGHQG0128psPu3TKdl6zXFaBVlnppVuMDYaDCRNbnIrxFYD9Uq1gCbG4Rb2KQ,,&typo=1&ancr_add=1> E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy<https://linkprotect.cudasvc.com/url?a=http%3a%2f%2fwww.uu.se%2fen%2fabout-uu%2fdata-protection-policy&c=E,1,T-ZGlVbKsYpy3BQoxYID1JErKwjOyca8FMetqKQQ1OKlH5SK6N_CWBRSj0wFeYhdUgwakPdnmdoQUP7SGMLSp4y0qnGdcwXPg5_DPmASUSqxeL2zplAymA,,&typo=1&ancr_add=1> |
