[psignifit-commits] psignifit branch, debian, updated. debian/3.0_beta.20120503.1-1-23-gdd9ad28

[<psi...@li...>]

This is an automated email from the git hooks/post-receive script. It was
generated because a ref change was pushed to the repository containing
the project "psignifit".

The branch, debian has been updated
       via  dd9ad28b1986b790688546ff38432efe012f9cee (commit)
       via  e271a59ad480ccd4ce3684cf0d3f0c3fb25fe61e (commit)
       via  33e232526efcecbbf2167e199a95938d10733a00 (commit)
       via  6206e579159a80eaf11acd78159309152209dd02 (commit)
       via  5e2e30f23ba0708055975ceae5851986eed2670f (commit)
       via  49ade76f2303744bc250acedbee3249b46499b9a (commit)
       via  500ae2e60a48a184a08b5aa06e1c7010d80c753b (commit)
       via  3c99e6b45d8a2b50145db5c4df067c091958a059 (commit)
       via  646578f2ce570ad71ade84a80ff46f4a1933c519 (commit)
       via  6c8d4a634cf5fdd212d179971ffd6e487d1180d3 (commit)
       via  2461a006d63d70430b6b6bd4e8ab2aa5c9b2b8f2 (commit)
       via  4dfaeaa0e592f586ac6464401dba025851ee98f7 (commit)
       via  113b12b24ef1aeae4b91a44355df4218e65dc238 (commit)
       via  4e9ac76a83cca7c1ad7f1982b2e0e3349308f502 (commit)
       via  c5703e9a0d6e313cba6782d6af33418eafde5981 (commit)
       via  9ad9b937e8b79f6d2d93bd0c1d01ca98a6a1b829 (commit)
       via  5c74107003614aa9910188162378cd7b3b1fdf63 (commit)
       via  faa17ecec308f303214c7549fc23c895e3ded790 (commit)
       via  01d237352aef72735c7615e55210d23fc743490c (commit)
       via  87a42744a34f14423b13c65768bfc5adeaf45259 (commit)
       via  74624a6404e14e79878bdb15907ce00c4ae57d23 (commit)
       via  3d22dfeff7662f1d3634694b8320195113faa8c5 (commit)
       via  d6047cc2c5a58f13ae0a09232664fb8b9c5e4161 (commit)
      from  c12aaacbabd54937419e14ddda9af6159b19470f (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.

- Log -----------------------------------------------------------------
commit dd9ad28b1986b790688546ff38432efe012f9cee
Author: Valentin Haenel <val...@gm...>
Date:   Wed Jun 20 14:58:06 2012 +0200

    [debian/NF] changelog for 3.0~beta.20120611.1-1

commit e271a59ad480ccd4ce3684cf0d3f0c3fb25fe61e
Author: Valentin Haenel <val...@gm...>
Date:   Wed Jun 20 14:54:36 2012 +0200

    [debian/RF] remove test_precision patch, has been fixed upstream

commit 33e232526efcecbbf2167e199a95938d10733a00
Merge: 6206e57 5e2e30f
Author: Valentin Haenel <val...@gm...>
Date:   Wed Jun 20 14:46:14 2012 +0200

    Merge commit 'release/3.0_beta.20120611.1' into debian
    
    * commit 'release/3.0_beta.20120611.1':
      [docs/NF] changelog entry for upload
      [build/NF] Makefile uses the py2.7 windows installer
      [C++/UT] cleaning up hybridMCMC in tests_all
      [py/UT] disable HybridMCMC test
      [docs/NF] TODO updated (NP)
      [C++/BF] for some data sets prenormalization was insufficient
      [py/FO] plot looks nicer for MultiplePMFs
      [C++/BF] poly core should yield 0 for negative values
      [C++/FO] removing a comment in integrate.cc
      [docs/NF] installing via NeuroDebian
      [docs/BF] typo
      [C++/BF/UT] Fix test precision
      [doc/NF] better help for quickstart
      [docs/BF] docstring in toplevel __init__.py
      [py/BF] missing coding statement
      [py/BF] Bugfix in ASIRInference.mcslope
      [py/BF] fixed a typo in psigniplot
      [docs/NF] Added plotppScatter to the API doc

commit 6206e579159a80eaf11acd78159309152209dd02
Author: Valentin Haenel <val...@gm...>
Date:   Wed Jun 20 14:44:25 2012 +0200

    [debian/BF] fix for unwritable home directories
    
    Fix for the following problem:
    
    From: "Aaron M. Ucko" <uc...@de...>
    Reply-To: "Aaron M. Ucko" <uc...@de...>, 67...@bu...
    Subject: Bug#674969: psignifit3: FTBFS - Failed to create /home/buildd/.matplotlib
    Date: Mon, 28 May 2012 21:58:41 -0400
    X-Envelope-To: <gmx...@es...>
    To: Debian Bug Tracking System <su...@bu...>
    X-Spam-Score: (0.001) BAYES_50
    
    Source: psignifit3
    Version: 3.0~beta.20120503.1-1
    Severity: serious
    Justification: fails to build from source
    
    Builds of psignifit3 in environments with unwritable home directories
    (as on the autobuilders) fail:
    
      File "/usr/lib/pymodules/python2.7/matplotlib/__init__.py", line 478, in _get_configdir
        raise RuntimeError("Failed to create %s/.matplotlib; consider setting MPLCONFIGDIR to a writable directory for matplotlib configuration data"%h)
    RuntimeError: Failed to create /home/buildd/.matplotlib; consider setting MPLCONFIGDIR to a writable directory for matplotlib configuration data
    
    Please do arrange for MPLCONFIGDIR to point to a private directory
    within the build tree.kkkk

-----------------------------------------------------------------------

Summary of changes:
 Makefile                      |    2 +-
 TODO                          |    6 ++
 changelog                     |   11 ++++
 debian/changelog              |    8 +++
 debian/patches/series         |    1 -
 debian/patches/test_precision |   18 ------
 debian/rules                  |    9 +++
 doc-src/API.rst               |    1 +
 doc-src/INSTALL_LINUX.rst     |   37 ++++++++---
 doc-src/QUICKSTART.rst        |  134 ++++++++++++++++++++++++++++-------------
 doc-src/WELCOME.rst           |    2 +-
 pypsignifit/__init__.py       |   42 +++++++++++++
 pypsignifit/psignidata.py     |    2 +-
 pypsignifit/psigniplot.py     |    2 +-
 src/integrate.cc              |    3 +-
 src/tests_all.cc              |    8 ++-
 tests/swignifit_raw_test.py   |    6 --
 17 files changed, 207 insertions(+), 85 deletions(-)
 delete mode 100644 debian/patches/test_precision


hooks/post-receive
-- 
psignifit