#73 NTR: glutaminylation ?

[Valerie Wood]

Hello,

I would like to annotate the protein modification reported here:
PMID:28801462
"Protein glutaminylation is a yeast-specific posttranslational modification of elongation factor 1A."

but I can't locate anything relevent searching on "glutamin...."

Does it exist as another name, or does it need to be added

Not sure how to define, but it seems to be the attachment of a specific glutamine residue in a glutamate in ef1A

Thanks,

Val

[Eric Deutsch]

Hi Val, we are now maintaining PSI-MOD over on GitHub, This site is now obsolete. I have posted your issue here:
https://github.com/HUPO-PSI/psi-mod-CV/issues/9
I hope that it will be addressed very soon.
Please continue the discussion there and create new term requests as GitHub issues over there.

thanks!
Eric

[Paul M Thomas]

Hi Val, (crossposting this to both sites)

This isn't currently in the PSI-MOD CV, but certainly should be! It would be similar to MOD:01970, but with a glutaminyl in place of the glutamyl. I'll create the pull request over on github to add this modification.

Paul

[John S. Garavelli]

Thanks for bringing the Glutaminylation modification to my attention. I am trying to migrate the PSI-MOD to GitHub. I will check that report, prepare entries for RESID and PSI-MOD and notify you of the pending entry identifiers.

[Paul M Thomas]

John, I've got this in a pull request over on GitHub now. https://github.com/HUPO-PSI/psi-mod-CV/pull/8/commits/c8e93731d382e173db311856755357848b3c7666 Didn't know that RESID was still going. Happy to integrate those new RESID terms into PSI-MOD.

[Eric Deutsch]

Hi John, no need to migrate PSI-MOD to GitHub, it is already there!

https://github.com/HUPO-PSI/psi-mod-CV

Can you help with an outstanding issue:

https://github.com/HUPO-PSI/psi-mod-CV/issues/5

Do you have the script that generates the XML from the OBO? If so, would
you share it?

If you send me your GitHub username, I can add you to the organization.

Thanks!

Eric

From: John S. Garavelli jsgaravelli@users.sourceforge.net
Sent: Monday, February 10, 2020 10:16 PM
To: [psidev:mod-controlled-vocab-changes] 73@mod-controlled-vocab-changes.psidev.p.re.sourceforge.net
Subject: [psidev:mod-controlled-vocab-changes] #73 NTR: glutaminylation ?

Thanks for bringing the Glutaminylation modification to my attention. I am
trying to migrate the PSI-MOD to GitHub. I will check that report, prepare
entries for RESID and PSI-MOD and notify you of the pending entry
identifiers.

---

[mod-controlled-vocab-changes:#73]
https://sourceforge.net/p/psidev/mod-controlled-vocab-changes/73/ NTR:
glutaminylation ?

Status: open
Group:
Created: Fri Feb 07, 2020 08:13 AM UTC by Valerie Wood
Last Updated: Mon Feb 10, 2020 07:46 PM UTC
Owner: nobody

Hello,

I would like to annotate the protein modification reported here:
PMID:28801462
"Protein glutaminylation is a yeast-specific posttranslational modification
of elongation factor 1A."

but I can't locate anything relevent searching on "glutamin...."

Does it exist as another name, or does it need to be added

Not sure how to define, but it seems to be the attachment of a specific
glutamine residue in a glutamate in ef1A

Thanks,

Val

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