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psidev-ms-cvs
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From: Matt C. <ch...@us...> - 2009-09-03 14:51:45
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Date: Thursday September 3, 2009 @ 14:51 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24895/psi-ms/mzML/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: - refactored Bruker instrument hierarchy into series (e.g. apex, flex, HCT) - improved Bruker instrument definitions - fixed databaseky typo |
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From: Eric D. <ede...@us...> - 2009-10-27 22:37:03
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Date: Tuesday October 27, 2009 @ 22:36 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21598 Modified Files: psi-ms.obo Log Message: - Obsoleted MS:1000211 charge number. Seen a dupe of MS:1000041 charge state - Added datatype and synonym "z" to MS:1000041 charge state - Added terms: MS:1000915 ! retention time window attribute MS:1000916 ! retention time window lower offset MS:1000917 ! retention time window upper offset MS:1000918 ! target list MS:1000919 ! target inclusion exclusion priority MS:1000920 ! includes supersede excludes MS:1000921 ! excludes supersede includes MS:1000922 ! Skyline MS:1000923 ! TIQAM MS:1000924 ! MaRiMba MS:1000925 ! ATAQS |
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From: Matt C. <ch...@us...> - 2009-11-18 16:17:32
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Date: Wednesday November 18, 2009 @ 16:17 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25417 Modified Files: psi-ms.obo Log Message: - added Shimadzu Biotech software ("MALDI Solutions") |
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From: Matt C. <ch...@us...> - 2009-11-18 16:29:57
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Date: Wednesday November 18, 2009 @ 16:29 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26590 Modified Files: psi-ms.obo Log Message: - bumped version/date info |
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From: Matt C. <ch...@us...> - 2009-12-10 17:54:02
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Date: Thursday December 10, 2009 @ 17:53 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv11605 Modified Files: psi-ms.obo Log Message: - obsoleted duplicate MaRiMba term Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Matt C. <ch...@us...> - 2009-12-30 21:11:07
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Date: Wednesday December 30, 2009 @ 21:10 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv9378 Modified Files: psi-ms.obo Log Message: - added nativeID and file format terms for AB TOF/TOF T2D spectra Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Eric D. <ede...@us...> - 2010-01-05 07:32:49
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Date: Tuesday January 5, 2010 @ 7:32 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv32500 Modified Files: psi-ms.obo Log Message: Added term: product interpretation rank |
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From: Andreas B. <and...@us...> - 2010-01-05 10:54:48
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Date: Tuesday January 5, 2010 @ 10:54 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv5138 Modified Files: psi-ms.obo unit.obo Log Message: changed fragmentation information term definitions; added replaced_by field to obsoleted MaRiMba term; added value-type specification for protein accession (MS:1000885) and local retention time (MS:1000895) |
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From: Eric D. <ede...@us...> - 2010-01-05 20:47:24
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Date: Tuesday January 5, 2010 @ 20:47 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv32096 Modified Files: psi-ms.obo Log Message: Added datatype definitions for several terms |
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From: Andreas B. <and...@us...> - 2010-02-15 09:05:56
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Date: Monday February 15, 2010 @ 9:05 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv28446 Modified Files: lastID.txt psi-ms.obo Log Message: added scaffold terms |
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From: Matt C. <ch...@us...> - 2010-02-23 19:15:20
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Date: Tuesday February 23, 2010 @ 19:15 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv22548 Modified Files: psi-ms.obo Log Message: - fixed missing delimiters and inconsistent capitalization Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Fredrik L. <fle...@us...> - 2010-03-02 13:50:58
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Date: Tuesday March 2, 2010 @ 13:50 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv30928 Modified Files: psi-ms.obo Log Message: Added terms for ion injection time, calibration spectrum and Shimadzu Biotech files. |
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From: Andreas B. <and...@us...> - 2010-03-04 12:25:43
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Date: Thursday March 4, 2010 @ 12:25 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv9668 Modified Files: psi-ms.obo Log Message: added term for SpectrumMill discriminant score |
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From: Matt C. <ch...@us...> - 2010-04-08 15:16:58
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Date: Thursday April 8, 2010 @ 15:16 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv21041 Modified Files: psi-ms.obo Log Message: - removed duplicate xref for MS:1000041 - added term for FAIMS compensation voltage - added term for XCMS software Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Martin E. <eis...@us...> - 2010-06-10 11:04:54
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Date: Thursday June 10, 2010 @ 11:04 Author: eisenach http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv6464 Added Files: test.txt Log Message: Martin Test |
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From: Martin E. <eis...@us...> - 2010-06-10 11:06:40
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Date: Thursday June 10, 2010 @ 11:06 Author: eisenach http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv7110 Removed Files: test.txt Log Message: Martin test |
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From: Martin E. <eis...@us...> - 2010-07-19 09:47:05
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Date: Monday July 19, 2010 @ 9:46 Author: eisenach http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv17426 Modified Files: psi-ms.obo Log Message: ME, added some terms about software and search type from Salvador / ProteoRed |
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From: Eric D. <ede...@us...> - 2010-08-11 17:35:00
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Date: Wednesday August 11, 2010 @ 17:34 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv13132 Modified Files: psi-ms.obo Log Message: Added AB SCIEX QTRAP 5500 and AB SCIEX TripleTOF 5600 |
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From: Matt C. <ch...@us...> - 2010-12-22 23:20:26
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Date: Wednesday December 22, 2010 @ 23:20 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv7683 Modified Files: psi-ms.obo Log Message: - added MyriMatch, DirecTag, TagRecon, and Pepitome software from the Tabb Lab and their search engine scores (MVH and mzFidelity) - changed all instances of "sequest" to "Sequest", "mascot" to "Mascot", "paragon" to "Paragon", and "xtandem" to "X!Tandem" Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Gerhard M. <ger...@us...> - 2012-11-28 12:06:56
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Date: Wednesday November 28, 2012 @ 12:06 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv10916 Modified Files: lastID.txt psi-ms.obo Log Message: New version 3.41.0: - Added a data type to all 'quantification datatype' (MS:1001805) childs - Obsoleted old terms for the TOPP software - Added new terms for the TOPP software |
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From: Gerhard M. <ger...@us...> - 2012-12-03 17:24:13
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Date: Monday December 3, 2012 @ 17:24 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv5701 Modified Files: lastID.txt Log Message: New version 3.42.0 of psi-ms.obo: - New terms for TOPP software - New terms for ProteoWizard software - New terms for IsobariQ software - Added definitions to many terms |
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From: Gerhard M. <ger...@us...> - 2012-12-03 17:25:46
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Date: Monday December 3, 2012 @ 17:25 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv5802 Modified Files: psi-ms.obo Log Message: New psi-ms.obo 3.42.0 |
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From: Gerhard M. <ger...@us...> - 2012-12-11 16:07:26
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Date: Tuesday December 11, 2012 @ 16:07 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31132 Modified Files: lastID.txt psi-ms.obo Log Message: New version 3.43.0 - added terms for peptide grouping categories in PAnalyzer |
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From: Gerhard M. <ger...@us...> - 2012-12-19 16:03:50
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Date: Wednesday December 19, 2012 @ 16:03 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31294 Modified Files: psi-ms.obo Log Message: New version 3.44.0: - Prefixed the protein inference terms for Gorka with PAnalyzer: |
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From: Gerhard M. <ger...@us...> - 2013-01-22 07:55:24
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Date: Tuesday January 22, 2013 @ 7:55 Author: gerhard64mayer http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv7301 Modified Files: lastID.txt psi-ms.obo Log Message: New version 3.45.0: - Added new term 'decoy peptide' |
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