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psidev-ms-cvs
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From: Marc S. <mar...@us...> - 2009-06-23 08:13:03
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Date: Tuesday June 23, 2009 @ 8:11 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27944/controlledVocabulary Modified Files: psi-ms.obo Log Message: Updated MALDI term units |
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From: Andreas B. <and...@us...> - 2009-06-23 14:55:02
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Date: Tuesday June 23, 2009 @ 14:55 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7965 Modified Files: psi-ms.obo Log Message: added database sequence details as parent of taxanomy descriptions |
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From: Marc S. <mar...@us...> - 2009-06-23 15:44:58
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Date: Tuesday June 23, 2009 @ 15:44 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14743/controlledVocabulary Modified Files: psi-ms.obo Log Message: fixed term name |
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From: Andreas B. <and...@us...> - 2009-06-27 14:25:44
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Date: Saturday June 27, 2009 @ 14:25 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26217 Modified Files: lastID.txt psi-ms.obo Log Message: addressed PI issues 81-84,86,87 |
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From: Matt C. <ch...@us...> - 2009-07-01 20:59:32
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Date: Wednesday July 1, 2009 @ 20:59 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23770/psi-ms/mzML/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: - added new Thermo Scientific instrument model: TSQ Vantage - added nativeID format and mass spectrometer file format for Agilent MassHunter sources |
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From: Andreas B. <and...@us...> - 2009-07-02 14:10:57
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Date: Thursday July 2, 2009 @ 13:30 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32108 Modified Files: psi-ms.obo lastID.txt Log Message: fixed id of Agilent MassHunter file; added taxonomy filter types and filters and re-grouped the related terms |
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From: Andreas B. <and...@us...> - 2009-07-06 09:42:07
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Date: Monday July 6, 2009 @ 9:42 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19383 Modified Files: psi-ms.obo Log Message: included some of the correction of Juan Antonio |
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From: Andreas B. <and...@us...> - 2009-07-14 13:49:17
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Date: Tuesday July 14, 2009 @ 13:49 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24165 Modified Files: psi-ms.obo lastID.txt Log Message: Added new terms and applied changes; see minutes of PSI-PI Teleconference (July 9 2009) |
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From: Andreas B. <and...@us...> - 2009-07-14 15:10:19
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Date: Tuesday July 14, 2009 @ 15:10 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv3295 Modified Files: psi-ms.obo lastID.txt Log Message: added frag:precursor ion; some minor changes |
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From: Andreas B. <and...@us...> - 2009-07-14 16:31:55
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Date: Tuesday July 14, 2009 @ 16:31 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17080 Modified Files: psi-ms.obo lastID.txt Log Message: added two new terms for neutral loss value (366 does not allow values) |
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From: Eric D. <ede...@us...> - 2009-07-14 17:24:40
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Date: Tuesday July 14, 2009 @ 17:24 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv23491 Modified Files: psi-ms.obo Log Message: Updated unit ontology to version 1.21 |
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From: Marc S. <mar...@us...> - 2009-07-15 06:47:58
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Date: Wednesday July 15, 2009 @ 6:47 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8702/controlledVocabulary Modified Files: psi-ms.obo Log Message: Added 'absorbance unit' to intensity terms |
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From: Matt C. <ch...@us...> - 2009-07-20 18:15:33
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Date: Monday July 20, 2009 @ 18:15 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv6234/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - removed synonym which was exactly equal to the term's name |
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From: Eric D. <ede...@us...> - 2009-08-04 22:37:36
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Date: Tuesday August 4, 2009 @ 22:37 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19321 Modified Files: psi-ms.obo Log Message: Updates for TraML: Freed term "peak" from purgatory Added terms: > id: MS:1000882 > name: percent of base peak times 100 > id: MS:1000883 > name: peak intensity rank > id: MS:1000884 > name: peak targeting suitability rank > id: MS:1000885 > name: transition > id: MS:1000886 > name: transition validation method > id: MS:1000887 > name: transition optimized on specified instrument > id: MS:1000888 > name: transition validated with an MS/MS spectrum on specified instrument > id: MS:1000889 > name: transition purported from an MS/MS spectrum on a different, specified instrument > id: MS:1000890 > name: transition predicted by informatic analysis |
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From: Eric D. <ede...@us...> - 2009-08-06 17:30:00
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Date: Thursday August 6, 2009 @ 17:29 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25742 Added Files: psi-ms_ontology.txt Log Message: Added metadata file for the CV to be used by BioOntology browser. |
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From: Eric D. <ede...@us...> - 2009-08-07 00:03:00
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Date: Friday August 7, 2009 @ 0:02 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8768 Modified Files: psi-ms_ontology.txt Log Message: remove | character at request of Trish Whetzel |
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From: Eric D. <ede...@us...> - 2009-08-07 05:43:22
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Date: Friday August 7, 2009 @ 5:43 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19493 Modified Files: psi-ms.obo Log Message: Adding more terms for TraML |
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From: Eric D. <ede...@us...> - 2009-08-07 07:06:24
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Date: Friday August 7, 2009 @ 7:06 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29862 Modified Files: psi-ms.obo Log Message: Fixed units on some TraML terms |
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From: Eric D. <ede...@us...> - 2009-08-07 07:16:01
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Date: Friday August 7, 2009 @ 7:15 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30900 Modified Files: psi-ms.obo Log Message: added tab delimited text file as a term |
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From: Eric D. <ede...@us...> - 2009-08-07 21:18:43
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Date: Friday August 7, 2009 @ 21:18 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16237 Modified Files: psi-ms_ontology.txt Log Message: fixed spacing of contact field |
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From: Darren K. <dke...@us...> - 2009-08-07 21:32:25
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Date: Friday August 7, 2009 @ 21:32 Author: dkessner http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19354 Modified Files: psi-ms.obo Log Message: ProteoWizard: Cedars-Sinai -> USC |
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From: Andreas B. <and...@us...> - 2009-08-16 21:10:16
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Date: Sunday August 16, 2009 @ 21:10 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7625 Modified Files: psi-ms.obo lastID.txt Log Message: added terms 1526-28, see psi-pi issue 53 for details |
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From: Andreas B. <and...@us...> - 2009-08-16 21:15:15
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Date: Sunday August 16, 2009 @ 21:14 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8060 Modified Files: psi-ms.obo Log Message: update topology of retention time |
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From: Andreas B. <and...@us...> - 2009-08-19 11:09:38
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Date: Wednesday August 19, 2009 @ 11:09 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16782 Modified Files: psi-ms.obo lastID.txt Log Message: added new IDFormat terms for mzIdentML |
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From: Fredrik L. <fle...@us...> - 2009-08-26 07:44:07
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Date: Wednesday August 26, 2009 @ 7:43 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29127 Modified Files: psi-ms.obo Log Message: Added units for peak intensity to equal those found for intensity array |
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