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From: Matt C. <ch...@us...> - 2009-02-26 17:10:49
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Date: Thursday February 26, 2009 @ 17:10 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11654/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - added diagnostic LC array types - added Bruker U2 nativeID format |
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From: Matt C. <ch...@us...> - 2009-02-24 23:17:05
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Date: Tuesday February 24, 2009 @ 22:28 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11226/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - added Steffan's terms |
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From: Marc S. <mar...@us...> - 2009-02-18 08:22:02
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Date: Wednesday February 18, 2009 @ 8:21 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7304/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: Updated CV: added intensity unit 'counts per second', made lowest/highest wavelength value a 'chromatogram attribute', fixed minor formatting errors |
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From: Eric D. <ede...@us...> - 2009-02-17 23:13:08
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Date: Tuesday February 17, 2009 @ 23:12 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/document Update of /cvsroot/psidev/psi/psi-ms/mzML/document In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8433 Modified Files: mzML1.1.0_specificationDocument.doc Log Message: Updated to RC4 |
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From: Marc S. <mar...@us...> - 2009-02-13 09:50:33
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Date: Friday February 13, 2009 @ 9:50 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv17808/controlledVocabulary Modified Files: psi-ms.obo Log Message: added chromatogram terms |
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From: Marc S. <mar...@us...> - 2009-02-12 10:57:30
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Date: Thursday February 12, 2009 @ 10:57 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv28669/controlledVocabulary Modified Files: psi-ms.obo Log Message: Unit and type changes discussed at the last conference call |
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From: Eric D. <ede...@us...> - 2009-02-11 00:37:21
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Date: Wednesday February 11, 2009 @ 0:37 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/document Update of /cvsroot/psidev/psi/psi-ms/mzML/document In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1893 Modified Files: mzML1.1.0_specificationDocument.doc Log Message: Updated to RC3 |
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From: Matt C. <ch...@us...> - 2009-02-10 22:52:04
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Date: Tuesday February 10, 2009 @ 22:52 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16856/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - bumped version |
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From: Matt C. <ch...@us...> - 2009-02-10 22:51:10
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Date: Tuesday February 10, 2009 @ 22:51 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16187/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed a few obsolete terms - replaced PDA spectrum with absorption spectrum - added EMR spectrum and emission spectrum |
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From: Marc S. <mar...@us...> - 2009-02-09 11:01:36
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Date: Monday February 9, 2009 @ 11:01 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21422/controlledVocabulary Modified Files: psi-ms.obo Log Message: Renamed some terms because of 'm/z' in term name (as decided on the list) |
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From: Marc S. <mar...@us...> - 2009-02-06 15:15:41
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Date: Friday February 6, 2009 @ 15:15 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv4617 Modified Files: psi-ms.obo Log Message: updated spectrum representation term names |
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From: Fredrik L. <fle...@us...> - 2009-02-06 10:14:12
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Date: Friday February 6, 2009 @ 10:14 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv5279 Modified Files: psi-ms.obo Log Message: Added term for scan analyzer offset |
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From: Marc S. <mar...@us...> - 2009-02-05 08:41:00
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Date: Thursday February 5, 2009 @ 8:40 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21713 Modified Files: psi-ms.obo Log Message: Updated units as decided on the last call |
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From: Matt C. <ch...@us...> - 2009-02-04 18:05:35
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Date: Wednesday February 4, 2009 @ 18:05 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19203/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - updated release date and creator (third time's the charm) |
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From: Matt C. <ch...@us...> - 2009-02-04 18:01:55
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Date: Wednesday February 4, 2009 @ 18:01 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv18384/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - updated revision to reflect previous changes |
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From: Matt C. <ch...@us...> - 2009-02-04 17:44:39
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Date: Wednesday February 4, 2009 @ 17:44 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16588/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed obsolete terms |
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From: Matt C. <ch...@us...> - 2009-02-03 22:29:49
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Date: Tuesday February 3, 2009 @ 22:29 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv14442/psi-ms/mzML/controlledVocabulary Modified Files: psi-ms.obo Log Message: - fixed Thermo native id format - fixed spectrum type hierarchy - obsoleted merged "enhanced resolution spectrum" term - obsoleted merged "product ion spectrum" term - obsoleted merged "nth generation product ion spectrum" term |
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From: Lennart M. <mar...@us...> - 2009-02-03 18:47:38
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Date: Tuesday February 3, 2009 @ 18:47 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv20143 Modified Files: mzML1.1.0.xsd Log Message: Fixed a silly bug with the full typing of source, analyzers and detector with regards to generating code using JAXB. Nothing but aesthetic changes compared to previous version (1.5). |
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From: Fredrik L. <fle...@us...> - 2009-02-03 17:07:02
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Date: Tuesday February 3, 2009 @ 17:06 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv32596 Modified Files: mzML1.1.0.xsd Log Message: Changed documentation of scan window elements to refer to 'scan' instead of 'selection' |
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From: Marc S. <mar...@us...> - 2009-01-28 15:02:23
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Date: Wednesday January 28, 2009 @ 15:02 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24153 Modified Files: lastID.txt psi-ms.obo Log Message: fixed typo in term name |
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From: Fredrik L. <fle...@us...> - 2009-01-28 13:39:18
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Date: Wednesday January 28, 2009 @ 13:39 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16440 Modified Files: mzML1.1.0.xsd Log Message: Removed NeutralLoss, removed Activation from ProductTypy, made selectIonList optional, added ProductList. |
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From: Marc S. <mar...@us...> - 2009-01-28 10:33:28
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Date: Wednesday January 28, 2009 @ 10:33 Author: marc_sturm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv31538/controlledVocabulary Modified Files: psi-ms.obo Log Message: Added new peak picking types |
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From: Eric D. <ede...@us...> - 2009-01-26 20:17:19
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Date: Monday January 26, 2009 @ 20:16 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/document Update of /cvsroot/psidev/psi/psi-ms/mzML/document In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv27942 Added Files: mzML1.1.0_specificationDocument.doc Log Message: Added RC2 of mzML 1.1.0 specification document. |
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From: Lennart M. <mar...@us...> - 2009-01-22 20:41:47
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Date: Thursday January 22, 2009 @ 20:41 Author: martlenn http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/schema Update of /cvsroot/psidev/psi/psi-ms/mzML/schema In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24889 Modified Files: mzML1.1.0.xsd mzML1.1.0_idx.xsd Log Message: Aesthetic changes to the schema which aid code generation with tools such as JAXB. These changes do not change anything content-wise. |
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From: RCote <rg...@us...> - 2009-01-21 16:08:34
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Date: Wednesday January 21, 2009 @ 16:08 Author: rglcote http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv1699 Modified Files: psi-ms.obo Log Message: there was an extra linebreak at line 90 that caused the OBO parser to fail to load the ontology properly. the offending linebreak has been deleted and the ontology can be loaded into OBOEdit and the OLS |
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