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From: Matt C. <ch...@us...> - 2009-12-30 21:11:07
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Date: Wednesday December 30, 2009 @ 21:10 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv9378 Modified Files: psi-ms.obo Log Message: - added nativeID and file format terms for AB TOF/TOF T2D spectra Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Matt C. <ch...@us...> - 2009-12-10 17:54:02
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Date: Thursday December 10, 2009 @ 17:53 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory sfp-cvsdas-2.v30.ch3.sourceforge.com:/tmp/cvs-serv11605 Modified Files: psi-ms.obo Log Message: - obsoleted duplicate MaRiMba term Committed on the Free edition of March Hare Software CVSNT Server. Upgrade to CVS Suite for more features and support: http://march-hare.com/cvsnt/ |
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From: Matt C. <ch...@us...> - 2009-11-18 16:29:57
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Date: Wednesday November 18, 2009 @ 16:29 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv26590 Modified Files: psi-ms.obo Log Message: - bumped version/date info |
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From: Matt C. <ch...@us...> - 2009-11-18 16:17:32
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Date: Wednesday November 18, 2009 @ 16:17 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25417 Modified Files: psi-ms.obo Log Message: - added Shimadzu Biotech software ("MALDI Solutions") |
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From: Eric D. <ede...@us...> - 2009-10-27 22:37:03
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Date: Tuesday October 27, 2009 @ 22:36 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv21598 Modified Files: psi-ms.obo Log Message: - Obsoleted MS:1000211 charge number. Seen a dupe of MS:1000041 charge state - Added datatype and synonym "z" to MS:1000041 charge state - Added terms: MS:1000915 ! retention time window attribute MS:1000916 ! retention time window lower offset MS:1000917 ! retention time window upper offset MS:1000918 ! target list MS:1000919 ! target inclusion exclusion priority MS:1000920 ! includes supersede excludes MS:1000921 ! excludes supersede includes MS:1000922 ! Skyline MS:1000923 ! TIQAM MS:1000924 ! MaRiMba MS:1000925 ! ATAQS |
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From: Merle P. <rud...@ja...> - 2009-09-11 12:45:20
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From: Kathi S. <psi...@li...> - 2009-09-11 12:42:12
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From: Perla R. <psi...@li...> - 2009-09-07 00:54:10
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From: Matt C. <ch...@us...> - 2009-09-03 14:51:45
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Date: Thursday September 3, 2009 @ 14:51 Author: chambm http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv24895/psi-ms/mzML/controlledVocabulary Modified Files: lastID.txt psi-ms.obo Log Message: - refactored Bruker instrument hierarchy into series (e.g. apex, flex, HCT) - improved Bruker instrument definitions - fixed databaseky typo |
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From: Majorga <sap...@pr...> - 2009-08-27 16:59:39
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E knew that Pete had come to his door and was watching; he had the vague suspicion that it was quite possible th |
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From: Ehly <pro...@ve...> - 2009-08-26 08:24:34
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Eard of lock-ups, and state-prisons, and handcuffs. "O, I didn't mean any harm, sir," cried he, trying to steady his voice: "I reckon I ain't lost, sir; or, if I am, I ain't lost _much_!" "So, so," laughed the policeman, good-naturedly; "and what was your name, my little man, before you got lost, and didn't get lost _much_?" "My name is Horace Clifford, sir," replied the boy, wondering why a cruel policeman should want to laugh. "Well, well," said the man, not unkindly, "I'm glad I've come across ye, for your mother's in a terrible taking. What set ye out to run off? Come, now; don't be sulky. Give us your hand, and I guess, seein' it's you, we won't put you in the lock-up this time." Horace was very grateful to the officer for not handcuffing him on the spot; still he felt as if it was a great disgrace to be marched through the city by a policeman. Mrs. Clifford, Grace, and Mr. Lazel |
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From: Fredrik L. <fle...@us...> - 2009-08-26 07:44:07
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Date: Wednesday August 26, 2009 @ 7:43 Author: flevander http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29127 Modified Files: psi-ms.obo Log Message: Added units for peak intensity to equal those found for intensity array |
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From: Salloum <ro...@it...> - 2009-08-25 06:04:54
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Th but five dollars in his possession, which he had earned at haying. In 1850, after seven consecutive terms as Governor, he was defeated by a coalition of Democrats and Free-Soilers. He was as true a friend of a pure civil service as any man of the present day. Like a well-known English writer on political economy, and for similar reasons, he refused to furnish money for his own election expenses, however legitimate; thus, although unwillingly, placing the burden upon the shou |
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From: Olenick <hyp...@co...> - 2009-08-21 23:06:35
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S enjoying himself thoroughly in a quiet way, catching at the bits of floating seaweed and chips, spreading his fingers out like the arches of a miniature bridge, and letting the water rush through them, occasionally munching at his huge bun by way of variation. For a wonder Charlie's busy tongue was still; he saw by his father's countenance that he was not in a mood for talking. It wore a troubled, saddened expression; he was living over the old sorrow that Charlie's words had called up. His uncle, too, seemed in deep thought, and rowed on in silence; although they were unconscious of it, perhaps, there is no doubt that all three felt the influence of that beautiful calm summer evening. The rich hues of the setting sun were gradually fading out from the sky, yet wonderful shades of crimson, rose colour, and gold, still lingered lovingly amongst the clouds, and rested upon the waters. All the bustle of the town had been left far behind; there was nothing to break the silence but the measured plash of the oars, and the soft rippling and murmuring of the water as the little boat rode lightly over the waves. As Charlie gazed up at the glorious sky, he began to wonder where the sun went to every night, and how it was that there were always such lovely colours in the sky just where it disappeared; at last he came to the conclusion that the sun went into heaven, and that beautiful golden and rose-coloured light streamed out when the door was opened. Charlie liked this idea so much, that he was quite disappointed when he learned afterwards that it was not the case. "What a grand place heaven must be!" thought Charlie, remembering what he had heard at Sunday school. "How splendid Go |
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From: Andreas B. <and...@us...> - 2009-08-19 11:09:38
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Date: Wednesday August 19, 2009 @ 11:09 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16782 Modified Files: psi-ms.obo lastID.txt Log Message: added new IDFormat terms for mzIdentML |
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From: Andreas B. <and...@us...> - 2009-08-16 21:15:15
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Date: Sunday August 16, 2009 @ 21:14 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8060 Modified Files: psi-ms.obo Log Message: update topology of retention time |
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From: Andreas B. <and...@us...> - 2009-08-16 21:10:16
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Date: Sunday August 16, 2009 @ 21:10 Author: andreas_bertsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv7625 Modified Files: psi-ms.obo lastID.txt Log Message: added terms 1526-28, see psi-pi issue 53 for details |
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From: Darren K. <dke...@us...> - 2009-08-07 21:32:25
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Date: Friday August 7, 2009 @ 21:32 Author: dkessner http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19354 Modified Files: psi-ms.obo Log Message: ProteoWizard: Cedars-Sinai -> USC |
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From: Eric D. <ede...@us...> - 2009-08-07 21:18:43
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Date: Friday August 7, 2009 @ 21:18 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv16237 Modified Files: psi-ms_ontology.txt Log Message: fixed spacing of contact field |
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From: Eric D. <ede...@us...> - 2009-08-07 07:16:01
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Date: Friday August 7, 2009 @ 7:15 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv30900 Modified Files: psi-ms.obo Log Message: added tab delimited text file as a term |
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From: Eric D. <ede...@us...> - 2009-08-07 07:06:24
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Date: Friday August 7, 2009 @ 7:06 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv29862 Modified Files: psi-ms.obo Log Message: Fixed units on some TraML terms |
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From: Eric D. <ede...@us...> - 2009-08-07 05:43:22
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Date: Friday August 7, 2009 @ 5:43 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19493 Modified Files: psi-ms.obo Log Message: Adding more terms for TraML |
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From: Eric D. <ede...@us...> - 2009-08-07 00:03:00
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Date: Friday August 7, 2009 @ 0:02 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv8768 Modified Files: psi-ms_ontology.txt Log Message: remove | character at request of Trish Whetzel |
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From: Eric D. <ede...@us...> - 2009-08-06 17:30:00
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Date: Thursday August 6, 2009 @ 17:29 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv25742 Added Files: psi-ms_ontology.txt Log Message: Added metadata file for the CV to be used by BioOntology browser. |
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From: Eric D. <ede...@us...> - 2009-08-04 22:37:36
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Date: Tuesday August 4, 2009 @ 22:37 Author: edeutsch http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/mzML/controlledVocabulary Update of /cvsroot/psidev/psi/psi-ms/mzML/controlledVocabulary In directory ddv4jf1.ch3.sourceforge.com:/tmp/cvs-serv19321 Modified Files: psi-ms.obo Log Message: Updates for TraML: Freed term "peak" from purgatory Added terms: > id: MS:1000882 > name: percent of base peak times 100 > id: MS:1000883 > name: peak intensity rank > id: MS:1000884 > name: peak targeting suitability rank > id: MS:1000885 > name: transition > id: MS:1000886 > name: transition validation method > id: MS:1000887 > name: transition optimized on specified instrument > id: MS:1000888 > name: transition validated with an MS/MS spectrum on specified instrument > id: MS:1000889 > name: transition purported from an MS/MS spectrum on a different, specified instrument > id: MS:1000890 > name: transition predicted by informatic analysis |
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