Re: [Psidev-ms-vocab] adding ontology

[Eric D. <ede...@sy...>]

Hi Sean, certainly. I have added these terms for you. I adjusted the names
slightly to prefix with AB SCIEX to make them a little more specific. The
number listed are the final ones. Please let me know if you or anyone has
any comments or suggested changes on these:

 

[Term]

id: MS:1001480

name: AB SCIEX TOF/TOF nativeID format

def: "jobRun=xsd:nonNegativeInteger spotLabel=xsd:string
spectrum=xsd:nonNegativeInteger." [PSI:MS]

is_a: MS:1000767 ! native spectrum identifier format

 

[Term]

id: MS:1001481

name: AB SCIEX TOF/TOF database

def: "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument
database." [PSI:MS]

is_a: MS:1000560 ! source file type

 

[Term]

id: MS:1001482

name: AB SCIEX TOF/TOF 5800

def: "AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX
TOF/TOF 5800 Analyzer" [PSI:MS]

is_a: MS:1000121 ! AB SCIEX instrument model

 

Regards,

Eric

 

 

  _____  

From: Seymour, Sean [mailto:Sea...@li...] 
Sent: Wednesday, June 10, 2009 3:06 PM
To: Eric Deutsch
Subject: adding ontology

 

Hi Eric,

 

Good to see you at ASMS. We're trying to finish up our mzML converter. One
of the barriers to getting it to properly validate against the several
existing validators is that we lack some CV. How do I go about getting CV
added? I remember you were the one I was emailing a year or so ago about the
initial list for mzML. Are you still the right contact, or is there another
mechanism I should follow?

 

Thanks for any help!

 

Sean

 

 

The terms we're missing are: (made up accession numbers to get our output to
validate)

 

[Term]

id: MS:1001001

name: TOF/TOF nativeID format

def: "jobRun=xsd:nonNegativeInteger spotLabel=xsd:string
spectrum=xsd:nonNegativeInteger." [PSI:MS]

is_a: MS:1000767 ! native spectrum identifier format

 

[Term]

id: MS:1001002

name: TOF/TOF database

def: "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument
database." [PSI:MS]

is_a: MS:1000560 ! source file type

 

[Term]

id: MS:1001003

name: AB SCIEX TOF/TOF 5800

def: "AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX
TOF/TOF 5800 Analyzer" [PSI:MS]

is_a: MS:1000121 ! AB SCIEX instrument model