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From: Eric D. <ede...@sy...> - 2009-06-11 19:41:46
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Hi Sean, certainly. I have added these terms for you. I adjusted the names slightly to prefix with AB SCIEX to make them a little more specific. The number listed are the final ones. Please let me know if you or anyone has any comments or suggested changes on these: [Term] id: MS:1001480 name: AB SCIEX TOF/TOF nativeID format def: "jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger." [PSI:MS] is_a: MS:1000767 ! native spectrum identifier format [Term] id: MS:1001481 name: AB SCIEX TOF/TOF database def: "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database." [PSI:MS] is_a: MS:1000560 ! source file type [Term] id: MS:1001482 name: AB SCIEX TOF/TOF 5800 def: "AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyzer" [PSI:MS] is_a: MS:1000121 ! AB SCIEX instrument model Regards, Eric _____ From: Seymour, Sean [mailto:Sea...@li...] Sent: Wednesday, June 10, 2009 3:06 PM To: Eric Deutsch Subject: adding ontology Hi Eric, Good to see you at ASMS. We're trying to finish up our mzML converter. One of the barriers to getting it to properly validate against the several existing validators is that we lack some CV. How do I go about getting CV added? I remember you were the one I was emailing a year or so ago about the initial list for mzML. Are you still the right contact, or is there another mechanism I should follow? Thanks for any help! Sean The terms we're missing are: (made up accession numbers to get our output to validate) [Term] id: MS:1001001 name: TOF/TOF nativeID format def: "jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger." [PSI:MS] is_a: MS:1000767 ! native spectrum identifier format [Term] id: MS:1001002 name: TOF/TOF database def: "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database." [PSI:MS] is_a: MS:1000560 ! source file type [Term] id: MS:1001003 name: AB SCIEX TOF/TOF 5800 def: "AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyzer" [PSI:MS] is_a: MS:1000121 ! AB SCIEX instrument model |