Activity for Proteomics Standards Initiative
-
Eric Deutsch posted a comment on ticket #73
Hi John, no need to migrate PSI-MOD to GitHub, it is already there! https://github.com/HUPO-PSI/psi-mod-CV Can you help with an outstanding issue: https://github.com/HUPO-PSI/psi-mod-CV/issues/5 Do you have the script that generates the XML from the OBO? If so, would you share it? If you send me your GitHub username, I can add you to the organization. Thanks! Eric From: John S. Garavelli jsgaravelli@users.sourceforge.net Sent: Monday, February 10, 2020 10:16 PM To: [psidev:mod-controlled-vocab-changes]...
-
Paul M Thomas posted a comment on ticket #73
John, I've got this in a pull request over on GitHub now. https://github.com/HUPO-PSI/psi-mod-CV/pull/8/commits/c8e93731d382e173db311856755357848b3c7666 Didn't know that RESID was still going. Happy to integrate those new RESID terms into PSI-MOD.
-
John S. Garavelli posted a comment on ticket #73
Thanks for bringing the Glutaminylation modification to my attention. I am trying to migrate the PSI-MOD to GitHub. I will check that report, prepare entries for RESID and PSI-MOD and notify you of the pending entry identifiers.
-
Hi Val, (crossposting this to both sites) This isn't currently in the PSI-MOD CV, but certainly should be! It would be similar to MOD:01970, but with a glutaminyl in place of the glutamyl. I'll create the pull request over on github to add this modification. Paul
-
Hi Val, we are now maintaining PSI-MOD over on GitHub, This site is now obsolete. I have posted your issue here: https://github.com/HUPO-PSI/psi-mod-CV/issues/9 I hope that it will be addressed very soon. Please continue the discussion there and create new term requests as GitHub issues over there. thanks! Eric
-
Valerie Wood created ticket #73
NTR: glutaminylation ?
-
Valerie Wood created ticket #72
proline isomerization
-
Pablo Porras created ticket #384
New terms added
-
MI:0524 tem edit
-
"disrupting-ptm" needs adding to drop-down menu
-
This is currently managed using the feature name field. Probably not ideal in the...
-
New RNA interactions-related terms
-
New RNA interactions-related terms
-
New RNA interactions-related terms
-
New term: Active site labeling
-
I have just commited the following 'site-labelling protection' to the CV. Please...
-
I have just commited the following 'site-labelling protection' to the CV. Please...
-
new term: quartz crystal microbalance
-
Created term 'quartz crystal microbalance' (MI:2196), using the definition proposed...
-
Lukasz Salwinski created ticket #382
new term: quartz crystal microbalance
-
Hi. No, that's pretty much it. Just notice that 'conditional site labelling' currently...
-
Hi. No, that's pretty much it. Just notice that 'conditional site labelling' currently...
-
ok, so it looks like we will end up with: MI:0401:biochemical | probe interaction...
-
'site-labelling protection' seems to be quite specific as it is applicable only to...
-
'site-labelling protection' seems to be quite specific as it is applicable only to...
-
Pablo, 'site-labelling protection' seems to be quite specific as it is applicable...
-
Hi Lukasz, First, I put a copy of this and your previous email in sourceforge so...
-
I'm afraid it won't cut it - 'proximity labelling technology' is defined as: 'Methods...
-
Currently we have the term "conditional site labelling', which has the related synonym...
-
Y-3-H change definition to be more inclusive?
-
Currently we have the term "conditional site labelling', which has the related synonym...
-
ClipSeq /CRAC
-
Added Gerben's suggestions
-
added original submission zip archive for refer...
-
Added todos for the example file
-
Added a TODO text file
-
accepted tracked changed and clarified insertion.
-
removed non-OBO format comments at bottom and t...
-
added examine from original submission. this ha...
-
Pierre-Alain Binz committed [r634]
added draft15
-
One more problem with inhibitory/negative 3 hybrid is that it would describe 3-body...
-
New term: Active site labeling
-
CLASH
-
This issue handled with the batch of terms created in issue #379.
-
Posted on behalf of Simona Panni: In general I was trying to reduce the number of...
-
The following terms have been created: CLIP, MI:2191 Combination of cross-linking...
-
Posted in behalf of Simona Panni: In general I was trying to reduce the number of...
-
Hi Simona, I was having a look at your method requests and I have a question. Concerning...
-
import peff sub directories
-
import peff sub directories
-
import peff sub directories
-
Create peff directory
-
simona panni created ticket #380
CLASH
-
ClipSeq /CRAC
-
LncRNA entry needed please
-
Done, assigned MI:2190 code. Pablo.
-
new qualifier=part_of
-
margaret duesbury created ticket #377
LncRNA entry needed please
-
New terms: conditional site labelling, BiLC, CODA-RET
-
Kinase exclusion assay
-
par_clip
-
The new term "subset" (MI:2179) has been created to solve this issue. Cheers, Pa...
-
par_clip
-
Birgit Meldal created ticket #375
new qualifier=part_of
-
Hi, I would rather leave the definition of 3 hybird as it is and use it exclusively...
-
Y-3-H change definition to be more inclusive?
-
New terms: conditional site labelling, BiLC, CODA-RET
-
New terms: conditional site labelling, BiLC, CODA-RET
-
Kinase exclusion assay
-
"soultion" needs latering to "solution"
-
Sorted.
-
sorry about spelling mistake!
-
"soultion" needs latering to "solution"
-
Vladimir Gorshkov created ticket #71
Dimethyl labeling - heavy
-
TAG: G1-spin label
-
Main chain uniquitination ?
-
TAG: SNAP-tag
-
interaction detection method: hydrophobic interaction chromatography (HIC)
-
Sandra Orchard modified ticket #366
AU5 tag
-
MI:1353
-
uracil interference assay - new cv term
-
kroey created ticket #367
uracil interference assay - new cv term
-
Proteomics Standards Initiative released /OldFiles/mzdata.xsd
-
-
-
-
-
Anna Melidoni created ticket #366
AU5 tag
-
Done.
-
LUMIER term update (MI:0729)
-
Done.
-
add 'inferred-from' as xref qualifier
-
MI:1351
-
new db orphanet
-
MI:1350
-
new CV: ChEMBL target
-
MI:1348 ChEMBl entry also updated
-
Marine Dumousseau committed [r629]
updated to latest snapshots
1 >
