[proteowizard-support] msconvert error

[Lauzikaite, E. <e.l...@im...>]

Hello,

I was running msconvert on virtual Win10, when an error occurred and processing stopped. 8 command lines were running at the same time, all stopped at approximately the same time. Input was Waters raw files.

The syntax:

msconvert –f ‘path\to\filelist.txt’ --outdir ‘path\to\folder’ --outfile ‘filename’ --zlib -v

The error message:

processing file: X:\MS\PLASMA\LPOS.PRO\Data\final_data\AIRWAVE_LPOS_ToF05_P71W47_LTR.raw
writing output file: W:\mzML\airwave1\SLPOS\ AIRWAVE_LPOS_ToF05_P71W47_LTR.mzML
[SpectrumWorkerThreads::work] error in thread: Scan Read Error

Then, after a while, the output changed to:

processing file: X:\MS\PLASMA\LPOS.PRO\Data\final_data\AIRWAVE_LPOS_ToF05_P71W47_LTR.raw
[msconvert] Caught unknown exception.
Please report this error to su...@pr....
Attach the command output and this version information in your report:

ProteoWizard release: 3.0.10765 (2017-4-20)
ProteoWizard MSData: 3.0.10765 (2017-4-20)
ProteoWizard Analysis: 3.0.10730 (2017-4-10)
Build date: Apr 20 2017 09:42:48

The files look alright when opened with ‘SeeMS’ and this error hasn’t occurred before. What should I change in my approach?

Thank you so much in advance.

Regards,

Elzbieta

---
Elzbieta Lauzikaite
PhD student
Imperial College London
Section of Computational and Systems Medicine
SAF Building, Exhibition Road
London, SW7 2AZ
Email: e.l...@im... |Phone: +44 (0)77 9470 0505