#23 failure of msconvert through docker with chambm/pwiz-skyline... on Mac M1 Pro

[David Jaffe]

I have a Mac with an M1 Pro chip, and would like to use chambm/pwiz-skyline... to convert
Thermo .rawfiles to .mzML.

As a test case I'm using
20210129_RAD_PepMap_50cm_M96_PlusPNGaseF_Tryp_GlycoGlycan.raw

which was downloaded as part of MSV000087585 from https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp.

Here is my attempt:

docker run -it --rm -e WINEDEBUG=-all -v /Users/davidjaffe/tempo chambm/pwiz-skyline-i-agree-to-the-vendor-licenses wine msconvert /tempo/20210129_RAD_PepMap_50cm_M96_PlusPNGaseF_Tryp_GlycoGlycan.raw

WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested

wine64: virtual.c:256: alloc_pages_vprot: Assertion `end <= pages_vprot_size << pages_vprot_shift' failed.

qemu: uncaught target signal 6 (Aborted) - core dumped

wine64: virtual.c:256: alloc_pages_vprot: Assertion `end <= pages_vprot_size << pages_vprot_shift' failed.

qemu: uncaught target signal 6 (Aborted) - core dumped

I get the same errors if I remove

-e WINEDEBUG=-all

Do you have any suggestions?

Thanks very much,

David

[Todd Creasy]

Just pinging about this. I am experiencing the same problem. Will there be support for M1 Macs in the near future or is there a way around this?