PROPAB

PROPAB: Computation of Propensities and Other Properties from Segments of 3D structure of Proteins

Authors: Rifat Nawaz UL Islam1, Chittran Roy2, Parth Sarthi Sen Gupta3, Debanjan Mitra2, Sahini Banerjee4 and Amal Kumar Bandyopadhyay2*

1Department of Zoology, The University of Burdwan, West Bengal, 713104, India
2Department of Biotechnology, The University of Burdwan, West Bengal, 713104, India
3Department of Chemistry, IISER, Berhampur, Odisha, 760010, India
4Department of Biotechnology, Institute of Genetic Engineering, West Bengal, 700128, India
*Corresponding author

Features

Computes the propensity tables for helix, sheet and coil types from multiple 3D structure files following ab initio statistical procedure.
Incorporate %-composition and physicochemical properties along with residues propensities.
Prepares FASTA files for different segments (Helix, Strand and Coil) following exact order of their presence in the entire sequence.

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