unable to process obo files with duplicate term names

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#6 unable to process obo files with duplicate term names

Status: open

Owner: nobody

Labels: None

Priority: 5

Updated: 2009-01-16

Created: 2009-01-16

Creator: angiuoli

Private: No

The ec.obo file created from a recent copy of enzyme.dat contains duplicated term names. The obo2chado script reports an error and dies. I'm not sure if the obo file spec allows duplicated term names, so a fatal error may be good here. But its still a problem since the obo2chado script dies and the initdb ergatis component is stuck.

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angiuoli - 2009-01-16

for a simple workaround, added a flag --allow_duplicates to obo2chado script and ergatis component. set the default behavior to false

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unable to process obo files with duplicate term names

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#6 unable to process obo files with duplicate term names

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