popoolation / Tickets / #4 a step forward if possible

#4 a step forward if possible

Status: New

Owner: nobody

Labels: None

Priority: Medium

Type: Defect

Updated: 2014-12-10

Created: 2011-07-04

Creator: Anonymous

Private: No

Originally created by: elzedliu

Hi there,

I am wondering if it is possible to also calculate Fst.

Given that you can successfully infer Pi and theta, i think you should be able to infer Fst, because it needs only to know the alternative allele frequencies.

Regards,

Huanle

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Anonymous - 2014-12-10

Originally posted by: alyssa.w... (code.google.com)@gmail.com

Use popoolation2 https://code.google.com/p/popoolation2/wiki/Tutorial#Fst-values:_measure_differentiation_between_populations

*Originally posted by:* [alyssa.w...@gmail.com](http://code.google.com/u/116088494506753890696/) Use popoolation2 [https://code.google.com/p/popoolation2/wiki/Tutorial\#Fst-values:\_measure\_differentiation\_between\_populations](https://code.google.com/p/popoolation2/wiki/Tutorial#Fst-values:_measure_differentiation_between_populations)

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a step forward if possible

estimate natural variation and positive selection

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#4 a step forward if possible

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