#3 I am not a genius and do not want to mess with the parser

[Anonymous]

Originally created by: jewb... (code.google.com)@gmail.com

Error while parsing.

first several lines of pileup:

scaffold102    94    C    M    75    75    30    11    ,,A.a.aAA,^?.    ggebegegdBg
scaffold102    175    G    S    35    76    30    8    .C.cC,CC    Begcgggg
scaffold102    323    A    R    27    69    30    8    g$ggG,,g,    g`fggggg
scaffold102    480    C    A    51    51    30    8    aaAaaaaA    ggcgeggg
scaffold102    1024    A    R    20    20    30    13    ,.,,,.....gG^?g    gbfggacc_g\bR

perl ~/tools/popoolation_1.017/Variance-sliding.pl --input all38pigeon.pileup --output all38pigeons.pi --measure pi --window-size 10000 --step-size 10000 --min-count 2 --min-coverage 10 --max-coverage 100 --min-qual 28 --pool-size 38

Error:

size of sequence does not equal size of quality:  79, scaffold102    1990    G    R    79    104    30    13    ,,aaaaAa,,,A.    gUfXgggVgeZcg

[Joanna Griffiths]

Hello,
I have run into the same problem and was wondering if this was resolved?

Thank you