did you ever find the solution to this problem? I'm also using a non-dmel genome and i can only get piN/piS for ~200 genes. I'm guessing this has to do with the start/stop codons as well ...
debug in progress
Tajima's D denominator uses one function for alphastarcalc and betastarcalc
subsampling gives error
Hello, I have run into the same problem and was wondering if this was resolved? Thank you
Just to add: I can see that coverage isn't even across the whole contig in the example...
Subsampling pileups with subsample-pileup.pl
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updated docu
To follow up: as often seems to happen, once I submitted this ticket I discovered...
To follow up: as often seems to happen, once I submitted this ticket I discovered...
Scripts for calculating Dxy
no changes have been made, it's the number of chromosomes still. Thanks for pointing...
I would like to follow up on this issue. I don't know what changes to the software...
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