popoolation

estimate natural variation and positive selection

Brought to you by: rokofler

Downloads: 2 This Week

Last Update: 2024-06-11

Get an email when there's a new version of popoolation

PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation allows to calculate Tajima’s Pi, Watterson’s Theta and Tajima’s D with a sliding window approach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We believe that PoPoolation will greatly aid this task by allowing a fast and user friendly analysis of NGS data from DNA pools.

Documentation: https://sourceforge.net/p/popoolation/wiki/Main/

Project Samples

popoolation Screenshot 1

Project Activity

See All Activity >

Follow popoolation

popoolation Web Site

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform Icon

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of popoolation!

Additional Project Details

Registered

2015-03-16

Report inappropriate content

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Recommended Projects

LDx
LDx uses approximate ML to estimate linkage from pooled NGS data
popoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
popoolationte
PoPoolation TE is a quick and simple pipeline for the analysis of transposable element insertions in (natural) populations using next generation sequencing. PoPoolation TE calculates TE insertion frequencies for TEs that are present in the reference genome as well as for novel TE insertions. PoPoolation TE requires paired-end reads from a pooled population, a reference sequence and transposable element sequences . Documentation: https://sourceforge.net/p/popoolationte/wiki/Main/
DMEAS
DNA Methylation Entropy Analysis Software
Whole-Genome Shotgun Assembler
Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.