plasmakin-users — Discussion related to using PlasmaKin

[Plasmakin-users] Problem in the compilation process

[Fellype <fel...@ya...>]

Hello,I am interested in use PlasmaKin to simulate the emission spectra of atoms, it looks to be an interesting software for this purpose, but I am having a problem in the compilation process. It returns an error in the compilation of libbk. The output can be seen below.
I am trying to compile PlasmaKin under Slackware Linux 14.1, with GCC 4.8.2. Are there another dependencies required to compile the PlasmaKin?
Could you help me to solve this issue?
Thanks in advance,
Fellype

Making all in libbk
make[1]: Entering directory `/home/fellype/compilando/plasmakin/plasmakin-1.6.1/libbk'
/bin/sh ../libtool   --mode=compile gfortran -J../modules  -g -O2 -c -o MpkBase.lo MpkBase.f90
libtool: compile:  gfortran -J../modules -g -O2 -c MpkBase.f90  -fPIC -o .libs/MpkBase.o
libtool: compile:  gfortran -J../modules -g -O2 -c MpkBase.f90 -o MpkBase.o >/dev/null 2>&1
/bin/sh ../libtool   --mode=compile gfortran -J../modules  -g -O2 -c -o MpkDatasql.lo MpkDatasql.f90
libtool: compile:  gfortran -J../modules -g -O2 -c MpkDatasql.f90  -fPIC -o .libs/MpkDatasql.o
MpkDatasql.f90: In function 'setenergies':
MpkDatasql.f90:2757:0: internal compiler error: in gfc_trans_where_2, at fortran/trans-stmt.c:4550
           Kreac(i)%Nproducts(:) /= 0.d0 )
 ^
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://gcc.gnu.org/bugs.html> for instructions.
make[1]: *** [MpkDatasql.lo] Error 1
make[1]: Leaving directory `/home/fellype/compilando/plasmakin/plasmakin-1.6.1/libbk'
make: *** [all-recursive] Error 1
root@vuv:plasmakin-1.6.1# 

 Fellype - fellypaoøyahoo.com.br Trabalhando por um mundo Livre. 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Mais ajuda quem não atrapalha do que atrapalha quem não ajuda...

[Plasmakin-users] Version 1.6.1 released

[Nuno p. <n.p...@ne...>]

With two days of delay from the initial plan, version 1.6.1 has been released.

This is a bug fix release. However the handling of reaction groups has been 
extended.
The errors fixed include four important errors in the library itself and six on 
compilation issues related with autotools or specific compilers.
Up to now the only compiler tested that has no problems is gfortran (see table 
bellow). Both g95 and ifort show different levels of success in building the 
library or runing the test codes. However all the compilers tested were 
successful in compilation of the Fortran code and the issues are related with 
building the shared libraries or loading the library in the Python interface. 
The testing system has been extended and improved.

* Compilation results *
--------------------------------------------------------------------------------
Platform ----- Compiler - Version ------------- Results
Linux/i686     gfortran     4.2                      OK
Linux/i686     gfortran     4.3            produces a buggy pkbase.mod 
Linux/i686     gfortran     4.4(trunk)             OK
Linux/x86_64   gfortran     4.3                    OK
Linux/x86_64   g95          0.92        library OK, problems with sqlite3,
                                                   Python complains about 
_g95_ symbols
Linux/x86_64   ifort        11.0         library OK, linking aborts with an
                                                   error in a ifort file
Darwin/i386    gfortran     4.2.2      library OK, not tested with sqlite3,
                                                   Python complains of missing
                                                   ldconfig.
Windows/MinGW (on test)
--------------------------------------------------------------------------------
Note: In some platform+compiler combination, two of the test can produce a 
wrong fail message because of different output format of namelist.
 

[Plasmakin-users] Compilation results for v1.6.0

[Nuno p. <n.p...@ne...>]

In the last days I have compiled the last version in several platforms with 
mixed results. The results up to now are the following: 

Platform: Linux, x68-64 + gfortran 4.3.2: all test successful;

Platform: Linux, i386 + gfortran 4.3.2: partial compilation, libtool complains 
about the module pkbase.mod produced by the compiler;

Platform: Linux, i386 + gfortran 4.2.4: all test successful;

Platform: Linux, i386 + g95 0.92: the library compiles. However with sqlite3 
support the tests can not be linked to libsqlite3.so. Without sqlite3 support, 
all tests compile but several of them fail.

Most (if not all) of these errors seem to be related to the compilers or to 
the instalation and not to Plasmakin itself.
In the next days we will try to solve these issues and release v1.6.1, a bug 
correction version.

[Plasmakin-users] Version 1.6.0 released

[Nuno p. <n.p...@ne...>]

With one month of delay version 1.6.0 has finally been released. 
This version brings a full integration between a species and reactions 
database, the data processing module, the chemical kinetics module and the 
Python interface. 
The main focus of this version is on stability, simplification of data input, 
integration of all components and robustness.
The structure of the database for gas properties and reactions has been 
improved and the package includes a partially filled database with common 
gases.
New in this release is the possibility to include levels in thermodynamic 
equilibrium (in preparation for the following release that will include the 
simulation of emission spectra).
The routine for diagnostic of species and reactions has been improved and 
expanded with line emission. A collection of regressions tests has been 
included to test both the Fortran libraries, database and Python interface.

According to the release plan, the next version will be released in a few 
weeks and include a new set of routines to simulate the emission spectra of 
atomic gases.

While the documentation is not updated, the programs used for regression are a 
good source of information on usage of the package.

Finally, although the compilation and installation system is directed to 
UNIX/Linux or Mac OS X systems, it can be used on MS Windows platforms with 
the help of the MinGW package (http://www.mingw.org).

Nuno Pinhão

[Plasmakin-users] Welcome to plasmakin-users!

[Nuno R. P. <np...@ne...>]

Hi

we are still setting the PlasmaKin site at Sourceforge. Stay tuned for 
exciting developments ahead!

N