[Phonopy-users] Need help to used modulation command
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From: Naveena P.S. <nav...@gm...> - 2026-02-12 16:21:47
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Hello
I am trying to do atomic modulation (atomic displacement) with respect to
the normal mode at the specific q point. I tried to use this command line:
phonopy --qe --modulation 2 2 1, 0.000000000 0.433012702 0.000000000 1
0.03 0 -c TiS2_primitive_scf.in --dim 2 2 1 -v.
But it provides error like this:
phonopy --qe --modulation 2 2 1, 0.000000000 0.433012702 0.000000000 1
0.03 0 -c TiS2_primitive_scf.in --dim 2 2 1 -v
_
_ __ | |__ ___ _ __ ___ _ __ _ _
| '_ \| '_ \ / _ \| '_ \ / _ \ | '_ \| | | |
| |_) | | | | (_) | | | | (_) || |_) | |_| |
| .__/|_| |_|\___/|_| |_|\___(_) .__/ \__, |
|_| |_| |___/
2.47.1
-------------------------[time 2026-02-06 16:53:41]-------------------------
Compiled with OpenMP support (max 8 threads).
Python version 3.11.11
Spglib version 2.7.0
Calculator interface: qe
Crystal structure was read from "TiS2_primitive_scf.in".
Unit of length: au
Modulation mode
Settings:
Supercell: [2 2 1]
Spacegroup: P-3m1 (164)
Number of symmetry operations in supercell: 48
------------------------------ primitive cell ------------------------------
Lattice vectors:
a 6.460973493253429 0.000000000000000 0.000000000000000
b -3.230486746626715 5.595367178253872 0.000000000000000
c 0.000000000000000 0.000000000000000 34.015070466894429
Atomic positions (fractional):
*1 Ti 0.00000000000000 0.00000000000000 0.50000000000000 47.867
*2 S 0.66666700000000 0.33333300000000 0.57891028530000 32.065
3 S 0.33333300000000 0.66666700000000 0.42108971470000 32.065
-------------------------------- unit cell ---------------------------------
Lattice vectors:
a 6.460973493253429 0.000000000000000 0.000000000000000
b -3.230486746626715 5.595367178253872 0.000000000000000
c 0.000000000000000 0.000000000000000 34.015070466894429
Atomic positions (fractional):
*1 Ti 0.00000000000000 0.00000000000000 0.50000000000000 47.867 > 1
*2 S 0.66666700000000 0.33333300000000 0.57891028530000 32.065 > 2
3 S 0.33333300000000 0.66666700000000 0.42108971470000 32.065 > 3
-------------------------------- super cell --------------------------------
Lattice vectors:
a 12.921946986506859 0.000000000000000 0.000000000000000
b -6.460973493253429 11.190734356507743 0.000000000000000
c 0.000000000000000 0.000000000000000 34.015070466894429
Atomic positions (fractional):
*1 Ti 0.00000000000000 0.00000000000000 0.50000000000000 47.867 > 1
2 Ti 0.50000000000000 0.00000000000000 0.50000000000000 47.867 > 1
3 Ti 0.00000000000000 0.50000000000000 0.50000000000000 47.867 > 1
4 Ti 0.50000000000000 0.50000000000000 0.50000000000000 47.867 > 1
*5 S 0.33333350000000 0.16666650000000 0.57891028530000 32.065 > 2
6 S 0.83333350000000 0.16666650000000 0.57891028530000 32.065 > 2
7 S 0.33333350000000 0.66666650000000 0.57891028530000 32.065 > 2
8 S 0.83333350000000 0.66666650000000 0.57891028530000 32.065 > 2
9 S 0.16666650000000 0.33333350000000 0.42108971470000 32.065 > 3
10 S 0.66666650000000 0.33333350000000 0.42108971470000 32.065 > 3
11 S 0.16666650000000 0.83333350000000 0.42108971470000 32.065 > 3
12 S 0.66666650000000 0.83333350000000 0.42108971470000 32.065 > 3
----------------------------------------------------------------------------
___ _ __ _ __ ___ _ __
/ _ \ '__| '__/ _ \| '__|
| __/ | | | | (_) | |
\___|_| |_| \___/|_|.
Also, it creates modulation.conf which contains:
DIM = 2 2 1
MODULATION = 2 2 1, 0 0.433012702 0 1 0.03 0.
Also, I found this idea from:
https://phonopy.github.io/phonopy/setting-tags.html.
Just today I started to use this package and I found your youtube videos
discussing how to use phonopy with qe. So I thought I could ask for some
help. kindly help me if you have any ideas.
with regards
Naveena P.
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