Protein Family Alignment Annotation Tool svncode

Latest jar files

Updated to handle low Q2 value

Update Error Message UI.

Updated to remove debugging statement

Updated to set Low Q2 value in a variable

Updated to display Low Q2 value in warning message dialog in PLS Module

Update to add showdialog method which accepts dialog size

Updated to change from modal to non-modal dialog.

Fix so secondary struct line annot is only applied to parts of sequene with structure.

fix secondary structure so Coils are only assigned parts of sequence with structure.