Protein Family Alignment Annotation Tool svncode

Updated to change from modal to non-modal dialog.

Fix so secondary struct line annot is only applied to parts of sequene with structure.

fix secondary structure so Coils are only assigned parts of sequence with structure.

fix typo where wrong res was specified

Added fix for exclude column with gaps bug.

Check that no. of X vars /cols used as input for training = no cols for predicting.

report all X variable columns in pred.txt

Updated for the following for PLS Module
1. Display error message in error dialog with text area
2. Display error message in error dialog for Presence of Permatuation and poor Q2 scenario.
3. Added validation to check residueForPrediction columns match with BCoefficient count.
4. Display information dialog when prediction process is completed.
5. Save selected file path when cancel button is clicked.
6. Exclude column with gaps

Updated for the following
1. Display error message in error dialog with text area
2. Display error message in error dialog for Presence of Permatuation and poor Q2 scenario.
3. Added validation to check residueForPrediction columns match with BCoefficient count.
4. Display information dialog when prediction process is completed.

Added new dialog to display PLS Module Error messages.