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Really only changes for exporting residue annotations and support for reading resdata.txt from data.jar...more files than this might be commited due to problem with Eclipse

pauldana 2004-11-04

Browse code at this revision

Parent: [r87]

Child: [r89]

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changed /trunk/pfaat/src/com/neogenesis/pfaat/AbstractCellEditor.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentApplet.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentListener.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentSorter.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AminoAcid.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AnalysisComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AnalysisNameComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AnalysisNamePanel.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AnalysisPanel.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/BrowserControl.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ChoosePdbChainDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ClustalWAlgorithm.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ClustalWDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ClustalWWorker.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/CmdLineOption.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/CollatedLineAnnotation.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColorSequenceDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/DisplayPropertiesListener.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditLineAnnDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ExtractProfileDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/FontManager.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/GroupComparisonDialog.java
/trunk/pfaat/src/com/neogenesis/pfaat/AbstractCellEditor.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentApplet.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentListener.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentSorter.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AminoAcid.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AnalysisComponent.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AnalysisNameComponent.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AnalysisNamePanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AnalysisPanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/BrowserControl.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ChoosePdbChainDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ClustalWAlgorithm.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ClustalWDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ClustalWWorker.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/CmdLineOption.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/CollatedLineAnnotation.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColorSequenceDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/DisplayPropertiesListener.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditLineAnnDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ExtractProfileDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/FontManager.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/GroupComparisonDialog.java Diff Switch to side-by-side view
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