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First whack at correlate...not finished yet...checking partial implementation into CVS so I can retrieve from Cambridge site

pauldana 2004-10-26

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Parent: [r80]

Child: [r82]

changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/Correlate.java
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateFrame.java
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateManager.java
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateOptions.java
added /trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateOptionsChooser.java
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/Correlate.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateManager.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateOptions.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/Correlate/CorrelateOptionsChooser.java Diff Switch to side-by-side view
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