Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

svncode Commit Log

Commit	Date
[r65] by pauldana Added command line changes marked with: // phdana cmd line Argument usage is like tihs if there are 2 or more parmas and the 2nd param is -analysis then 1st param is an alignment file and cmd-line driven pfaat is executed (legacy code) else if first parameter is -j then 2nd param is a jar, 3rd is an alignment file IN that jar and 4th is optionally a nhx tree file in that jar else first parameter is treated like an alignment file, and an optional 2nd parameter is treated as an nhx tree file	2004-10-05 15:25:30	Tree
[r64] by dcaffrey * empty log message *	2004-09-30 23:46:49	Tree
[r63] by pfarrington adding missing file	2004-09-28 08:35:12	Tree
[r62] by pfarrington [ 1011750 ] label atoms	2004-09-25 10:03:57	Tree
[r61] by dcaffrey * empty log message *	2004-09-24 01:24:32	Tree
[r60] by pauldana Fixes for source forge bugs: 1011674 expandable line anotation 1015241 sort by %id 1017645 double clickable sequence name and annotation	2004-09-23 17:59:28	Tree
[r59] by simonxi commented out focusmanager setting	2004-09-16 02:09:31	Tree
[r58] by pauldana Pauls changes for: 1. drawing gaps in consensus display 2. extend seelction to residue in PdbFrame	2004-08-19 10:41:34	Tree
[r57] by pauldana bug fixes for default file extension first shot at selecting just ATOMS from PdbFrame	2004-08-18 10:33:38	Tree
[r56] by pauldana various changes	2004-08-16 14:29:04	Tree

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