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Preliminary code for Feature#1530779 Secondary structure elements

Fixes Syntax problems with JDK 1.4

mocana 2006-08-17

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Parent: [r632]

Child: [r634]

changed /trunk/pfaat/src/com/neogenesis/pfaat/ProteinSecondaryStructureComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ProteinShapeIterator.java
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