Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

svncode Commit Log

Commit	Date
[r529] by dcaffrey Rename color scheme	2006-07-12 19:41:09	Tree
[r528] by dcaffrey Rename color scheme	2006-07-12 19:26:31	Tree
[r527] by pauldana fix - [ 1514489 ] Add residue annotation (rephrased)	2006-07-12 17:38:08	Tree
[r526] by kostocka tweaked doStandardDevScale to deal with potentially unremoved 0 variance columns	2006-07-12 15:52:45	Tree
[r525] by kostocka added MATLAB equivalent of ones() tweaked fixedWidthString	2006-07-12 15:43:16	Tree
[r524] by dcaffrey Affine scoring added: Gap opening and gap extension provides better alignment Bug Fix: Numbering PDB was incorrect when the pdb sequence to be associated with a sequence could not be aligned perfectly	2006-07-12 01:27:19	Tree
[r523] by dcaffrey Affine scoring added: Gap opening and gap extension provides better alignment	2006-07-12 01:26:36	Tree
[r522] by dcaffrey Bug Fix: Numbering PDB was incorrect when the pdb sequence to be associated with a sequence could not be aligned perfectly	2006-07-12 01:25:55	Tree
[r521] by dcaffrey Fix bug that was causing same chain to be counted more than once	2006-07-11 19:53:54	Tree
[r520] by dcaffrey Changed gap opening and gap extension values	2006-07-11 19:49:53	Tree

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