Protein Family Alignment Annotation Tool svncode

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Fixes Edit Res Annotation Dialog size

Removed "link" as a standard node

Fixed size/position of edit dialog

Fixed uppercase/lowercase bug
Moved Show/hide/Show all/ from edit menu to view menu in treeviewer

Edit REs Ann dialog...reworked color

fix for "sort by seq annotation as STRINg put blanks at BEGINING" bug

Fix for "Tree Zoom by right mouse can bogusly collapse tree in Y"

plus removing some unwanted print statments

Added new features for tree: view->show, meaning now you can
show / hide "user defined properties".

Fixed (hahaha yeah right) the inconsistencies with
"user defined properties" including duplicates and synonyms
for both alignment and tree whether generated or loaded.
As well as various ATVgraphic() draw bugs

Milestone #3 of tree->view->show reached.

This feature is complete except for one bug that
appears to be outside the code altered for this feature.

In particular the user defined proprties for the whole tree that
should be calculated as part of the "propert list" appear to NOT
be set correctly.

This means that in the MENU of view->show no user defined properties
show up...however you can still hide/show user defined properties
for individual nodes by using the checkboxes on the Node Panel.