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refactor /switch getNumberforAlignmnentIndex and getNumberForResidueIndex

dcaffrey 2005-07-29

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Parent: [r223]

Child: [r225]

changed /trunk/pfaat/src/com/neogenesis/pfaat/AboutDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/Sequence.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/io/PfamLoader.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/jmol/JmolFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbFrame.java
/trunk/pfaat/src/com/neogenesis/pfaat/AboutDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/Sequence.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/io/PfamLoader.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/jmol/JmolFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbFrame.java Diff Switch to side-by-side view
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