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Commit [r1939]  Maximize  Restore  History

Move various classes from src/forester/tree/ to src/org/pfaat/gui/tree/component/ and src/org/pfaat/core/tree/

dcaffrey 2023-07-26

Browse code at this revision

Parent: [r1938]

Child: [r1940]

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changed /trunk/pfaat/src/org/pfaat/commandline/tree/SubTreeOfSpecificNodes.java
changed /trunk/pfaat/src/org/pfaat/commandline/tree/Timetree4Treebest.java
changed /trunk/pfaat/src/org/pfaat/commandline/tree/TreeStatsForLineages.java
changed /trunk/pfaat/src/org/pfaat/commandline/tree/printAllSpecies.java
changed /trunk/pfaat/src/org/pfaat/core/msa/Sequence.java
changed /trunk/pfaat/src/org/pfaat/core/msa/io/PfaatLoader.java
changed /trunk/pfaat/src/org/pfaat/core/msa/io/PfamLoader.java
added /trunk/pfaat/src/org/pfaat/core/tree
added /trunk/pfaat/src/org/pfaat/core/tree/Branch.java
added /trunk/pfaat/src/org/pfaat/core/tree/Iterator.java
added /trunk/pfaat/src/org/pfaat/core/tree/MarkerIterator.java
added /trunk/pfaat/src/org/pfaat/core/tree/Node.java
added /trunk/pfaat/src/org/pfaat/core/tree/PostorderTreeIterator.java
added /trunk/pfaat/src/org/pfaat/core/tree/PreorderTreeIterator.java
added /trunk/pfaat/src/org/pfaat/core/tree/StackItem.java
added /trunk/pfaat/src/org/pfaat/core/tree/Tree.java
added /trunk/pfaat/src/org/pfaat/core/tree/TreeHelper.java
added /trunk/pfaat/src/org/pfaat/core/tree/TreeSequenceAnnotationList.java
changed /trunk/pfaat/src/org/pfaat/gui/msa/AlignmentFrame.java
changed /trunk/pfaat/src/org/pfaat/gui/msa/component/EditSeqNameDialog.java
changed /trunk/pfaat/src/org/pfaat/gui/msa/file/actioneventhandler/FileActionEventHandler.java
changed /trunk/pfaat/src/org/pfaat/gui/msa/find/action/ATVSearchPanel.java
changed /trunk/pfaat/src/org/pfaat/gui/msa/find/action/SequenceAnnotationSearchOptions.java
changed /trunk/pfaat/src/org/pfaat/gui/tree/ATVjframe.java
changed /trunk/pfaat/src/org/pfaat/gui/tree/component/ATVgraphic.java
/trunk/pfaat/src/org/pfaat/commandline/tree/SubTreeOfSpecificNodes.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/tree/Timetree4Treebest.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/tree/TreeStatsForLineages.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/commandline/tree/printAllSpecies.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/msa/Sequence.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/msa/io/PfaatLoader.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/msa/io/PfamLoader.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree
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/trunk/pfaat/src/org/pfaat/core/tree/Branch.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/Iterator.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/MarkerIterator.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/Node.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/PostorderTreeIterator.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/PreorderTreeIterator.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/StackItem.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/Tree.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/TreeHelper.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/core/tree/TreeSequenceAnnotationList.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/msa/AlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/msa/component/EditSeqNameDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/msa/file/actioneventhandler/FileActionEventHandler.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/msa/find/action/ATVSearchPanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/msa/find/action/SequenceAnnotationSearchOptions.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/tree/ATVjframe.java Diff Switch to side-by-side view
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/trunk/pfaat/src/org/pfaat/gui/tree/component/ATVgraphic.java Diff Switch to side-by-side view
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