Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

Commit [r1835] Maximize Restore History

Move to org.pfaat

Authored by: dcaffrey 2023-07-05

Browse code at this revision

Parent: [r1834]

Child: [r1836]

<< < 1 2 3 4 5 .. 7 > >> (Page 3 of 7)

changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetResFileForBackrub.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetSequenceForScwrl.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/RenumberAssociatedStructures.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/ReportAtomsWithinSpecifiedDistanceOfEachOther.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/ssapSuperposeToResAnnot.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/Atv.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/BranchRatiosForDuplicates.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/ExportLeafNames.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/GetMostAncientWithinSpeciesParalog.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/GetOutgroupOfRootedTree.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToTaggedUnrootedNh.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNh.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForAdaptiveBranchSiteLikelihood.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForRelaxDup.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/ParseTreebest.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/RenameLeavesInTree.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/SubTreeOfSpecificNodes.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/Timetree4Treebest.java
changed	/trunk/pfaat/src/org/pfaat/commandline/tree/TreeStatsForLineages.java
changed	/trunk/pfaat/src/org/pfaat/core/msa/analysis/AignSimilarityMatrix.java

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetResFileForBackrub.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetSequenceForScwrl.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/RenumberAssociatedStructures.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/ReportAtomsWithinSpecifiedDistanceOfEachOther.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/ssapSuperposeToResAnnot.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/Atv.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/BranchRatiosForDuplicates.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/ExportLeafNames.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/GetMostAncientWithinSpeciesParalog.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/GetOutgroupOfRootedTree.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToTaggedUnrootedNh.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNh.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForAdaptiveBranchSiteLikelihood.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/NhxToUnrootedNhForRelaxDup.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/ParseTreebest.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/RenameLeavesInTree.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/SubTreeOfSpecificNodes.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/Timetree4Treebest.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/tree/TreeStatsForLineages.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/core/msa/analysis/AignSimilarityMatrix.java Diff Switch to side-by-side view

<< < 1 2 3 4 5 .. 7 > >> (Page 3 of 7)