Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

svncode Commit Log

Commit	Date
[r1350] by dcaffrey * empty log message *	2011-10-24 20:49:39	Tree
[r1349] by dcaffrey * empty log message *	2011-10-24 15:40:45	Tree
[r1348] by dcaffrey * empty log message *	2011-10-24 15:17:33	Tree
[r1347] by dcaffrey * empty log message *	2011-10-22 15:53:54	Tree
[r1346] by dcaffrey * empty log message *	2011-10-22 15:42:27	Tree
[r1345] by dcaffrey * empty log message *	2011-10-21 19:19:19	Tree
[r1344] by adamwespiser added forceAssociateSequenceWithPDBFile, which associates pdb to specified sequence in an alignment without prompting the user via dialog boxes about potential mismatches.	2011-10-20 20:36:36	Tree
[r1343] by adamwespiser // Code for associating a pdbFIle with the specifeid sequence in a given alignment. // The two sequences must be exactly the same, or no association will be made. // The general steps to the algorithm are: 1) check sequences(pdb and alignment.sequence // are the same. 2) associate the pdb sequence with alignment sequence. 3) save the // resulting alingment.	2011-10-20 20:35:15	Tree
[r1342] by adamwespiser changes made for -assoc command line flag	2011-10-20 20:33:31	Tree
[r1341] by adamwespiser Added support for association of pdb chains to alignments from the command line	2011-10-20 20:32:44	Tree

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