Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

svncode Commit Log

Commit	Date
[r1336] by dcaffrey * empty log message *	2011-09-28 19:12:01	Tree
[r1335] by dcaffrey * empty log message *	2011-09-23 16:49:19	Tree
[r1334] by dcaffrey simple shannon	2011-09-23 13:18:46	Tree
[r1333] by dcaffrey lots of things	2011-09-20 20:32:10	Tree
[r1332] by dcaffrey shortest distances	2011-09-20 20:31:49	Tree
[r1331] by dcaffrey psa	2011-09-20 20:30:56	Tree
[r1330] by dcaffrey better handling of missing connects	2011-09-20 20:30:24	Tree
[r1329] by adamwespiser made change to residue propensity adjumentment: all score are multipled by 1 over highest score to extend range from 0 to 1.	2011-09-01 16:20:43	Tree
[r1328] by adamwespiser GetPatches.java has been modified to allow for amino acid propensity. Specifying the "-P" flag on the command line will calculate amino acid score for B%B as the multiple of conservation score and percent probability of finding amino acid of type X in an interface. The probabilities were calculated using the paralog dataset.	2011-08-31 16:50:48	Tree
[r1327] by adamwespiser "added support for percent ID cutoff"	2011-07-11 14:48:56	Tree

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