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Commit [r125]  Maximize  Restore  History

Removed warnings from zillions of files. Found two errors doign this. This changes a lot of files but is worth doing because over 100 not important warnings can obsucre the one or two important warnings.

The only warnings left now are DEPRECATION warnings

pauldana 2005-02-18

Browse code at this revision

Parent: [r124]

Child: [r126]

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changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/CollatedLineAnnotation.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/CollatedSequenceAnnotation.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilter.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilterComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilterDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColumnSortComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ColumnSortDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ConsensusComponent.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditAnnotationsDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditSeqAnnDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditSeqNameDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ExtractProfileDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/GroupComparisonDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/GroupDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/HMMERAlgorithm.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/HMMERDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/MutualInformationDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/PairwiseAlignmentFrame.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ProgressDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/RemoveGroupDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/RemoveRedundantSequencesDialog.java
/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/CollatedLineAnnotation.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/CollatedSequenceAnnotation.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilter.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilterComponent.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColumnFilterDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColumnSortComponent.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ColumnSortDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ComparisonFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusComponent.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditAnnotationsDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditSeqAnnDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditSeqNameDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ExtractProfileDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/GroupComparisonDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/GroupDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/HMMERAlgorithm.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/HMMERDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/MutualInformationDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/PairwiseAlignmentFrame.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ProgressDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/RemoveGroupDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/RemoveRedundantSequencesDialog.java Diff Switch to side-by-side view
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