Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

Commit [r1235] Maximize Restore History

New specificity score

Authored by: dcaffrey 2010-11-24

Browse code at this revision

Parent: [r1234]

Child: [r1236]

changed	/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusComponent.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScores.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScoresOptions.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScoresOptionsChooser.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/InformationScoreConsensusAction.java
added	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores
added	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores/SpecificityScoreConsensusAction.java
added	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores/SpecificityScoresOptionsChooser.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/sequence/Sequence.java

/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusComponent.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScores.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScoresOptions.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/ConservationScoresOptionsChooser.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ConservationScores/InformationScoreConsensusAction.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores

Directory.

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores/SpecificityScoreConsensusAction.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/SpecificityScores/SpecificityScoresOptionsChooser.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/sequence/Sequence.java Diff Switch to side-by-side view