Protein Family Alignment Annotation Tool svncode

now uses ../pfaat/certificate/pfaat.store

copy pfaatDate.jar to ../lib/pfaat.jar

Now only reports diffs that are not gaps in msa seq

Now only reports diffs that are not gaps in msa seq

Attempting to sign jars with pfaat certificate.

minor fixes

Catch situation where there are 1 atoms in th epdb file

Add pfam prosite evidence superfam smart annots, add safari for mac

fix import res annot so colors of preexisting annots are not overwritten

specificity score